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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATGGAACTACGTCGTCACAGCTCACAAACCCACCAACGTCACTCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATTATCGCgtatctactcctattccctttcgttttcctagggtttcatttcttctctttcaatttcgtcaccgtttatttaccctttcacttcgttttttcttccag

Basic information

species Glycine max
transcript GLYMA05G30530.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g51480.1 (Oryza sativa), 5'ss of exon 1
GTATATGGAACTACGTCGTCACAGCTCACAAACCCACCAACGTCACTCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATTATCGCgtatctactcctattccctttcgttttcctagggtttcatttcttctct----ttcaatttcgtcaccgtttatttaccctttcacttcgttttttcttccag
|  | |||||||||||||| || || ||||| ||||||| |||||| ||||||||||||||||| |||||| | ||  |  | ||||| |||||  ||||||   || || |||||||       | ||     |  |  | |   |||    ||    | ||||||     | |  | | | | | |||   |      |  
GCGTGTGGAACTACGTCGTGACGGCGCACAAGCCCACCAGCGTCACCCACTCCTGCGTCGGCAACTTCACCGGCCCCAACCAGCTCAACCTCATCGTCGCgtccgtaatc-tattccccccttcctcccccctctcgccctccaaatctagggttttgctgcgtcact-cccactcccgcctccccctcggggtcgggatcg-

upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G402002_T01 (Zea mays), 5'ss of exon 1
GTATATGGAACTACGTCGTCACAGCTCACAAACCCACCAACGTCACTCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATTATCGCgta--tctactcctattccctttcgttttcctagggtttcatttcttctctttcaatttcgtcaccgtttatttaccctttcacttcgttttttcttccag
|  | ||||||||||||||||| || ||||| ||||||| |||||  ||||||||||| ||||| || ||||| ||  |  | ||||| || |||||||||||  ||  |||||  | | | |  |    || |   | |  |    |||       | |  ||   | |    ||||||    || |    ||  |    
GCGTGTGGAACTACGTCGTCACGGCGCACAAGCCCACCAGCGTCAGCCACTCCTGCGTAGGCAACTTTACCAGCCCCAACCAGCTCAACCTTATTATCGCgtaaatcccctcctccttcgtcttctccctctcgccgtacgatctaactcggcttgctgctccaaaatgttcaaacccttgagattgggcgctttgtggg-

upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 5'ss of exon 1
GTATATGGAACTACGTCGTCACAGCTCACAAACCCACCAACGTCACTCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATTATCGCgtatctactcctattccctttcgttttcctagggtttcatttcttctctttcaatttcgtcaccgtttatttac--cctttcacttcgtttttt--cttccag-
|   |||||||||||| || || ||||||||||| ||||  ||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||||| |||||||   |   ||   ||| | | | |   |  | | ||| || || | | ||||||    | |  || | || |  |  || | || | |||     || ||  
GCTCATGGAACTACGTTGTTACGGCTCACAAACCGACCAGTGTCACTCACTCGTGCGTTGGCAACTTCACAAGTCCTCAAGAGCTCAATCTCATTGTCGCgtacgaaactct--ccccctacctctattt--gttatcaatttttgtttgtcaattagtccccttttgaattgcagctgttgatttgggtttagggttttcaat

upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 1
GTATATGGAACTACGTCGTCACAGCTCACAAACCCACCAACGTCACTCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATTATCGCgtatctactcctattccctttcgttttcctagggtttcatttcttctctttcaatttcgtc--accgtttatttaccctttcacttcgttttttcttccag-
|  |||||||||||| ||| || ||||| ||||| |||   ||||||||||| |||||||| || ||||| ||||||||||| |||||||||||| | |||||| ||   ||   | || || ||||  |    |||| ||| || |||  | |||  ||      ||| ||||    |||    |  ||       | || 
GCGTATGGAACTACGCCGTTACGGCTCAGAAACCGACCTGTGTCACTCACTCTTGCGTCGGGAACTTCACAAGTCCTCAAGAACTCAATCTCATTGTTGCgtatgtaa--cttcgctctatccttttttttttctttcctttgttgtctacctattgtgtgtagatgttaatttggggtttagggttcttaggaaagctagt

upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 1
GTATATGGAACTACGTCGTCACAGCTCACAAACCCACCAACGTCACTCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATTATCGCgtatctactcctattccctttcgttttcctagggtttcatttcttctctttcaatttcgtcaccgtttatttaccctt-tcacttcgttttttcttccag-----
|  | ||||| || || || || |||||||| |||||||| || || |||||||||||||||||||||||  | ||||| || ||||| ||||| || |||||| || | |  ||  ||||| | ||| |    | || ||   | |   |   ||  ||  |  ||| ||  || || |||   |        | | ||     
GCGTGTGGAATTATGTTGTTACGGCTCACAAGCCCACCAATGTTACGCACTCCTGCGTCGGCAATTTCACTGGCCCTCAGGAGCTCAACCTCATCATTGCgtatgtattgcatttttctttc-tattctt----tctctttgtgtgtgaatgtgttaggtttctctttgttggccattctcatgccaagaaaaatgctagggttt

upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ30457 (Selaginella moellendorffii), 5'ss of exon 1
GTATATGGAACTACGTCGTCACAGCTCACAAACCCACCAACGTCACTCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATTATCGCgtatctactcctattccctttcgttttcctagggtttcatttctt-ctctttcaatttcgtcaccgtttatttaccctttcacttcgttttttcttccag
|  | ||||||||||||||||| || ||||| || ||||| || || ||||| ||||| || |||||||| || || || || ||||||||||| ||||||||   | |||    |  ||| | |   || | | |||   |||  |||  ||| || |  ||                                     
GCGTCTGGAACTACGTCGTCACTGCGCACAAGCCGACCAATGTGACGCACTCGTGCGTTGGAAATTTCACGAGCCCCCACGAGCTCAATCTCATCATCGCgta---agtcc----ctgtttagctcctcttgcgcttctcctctcactcaatcatttcctccag------------------------------------

upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ23079 (Selaginella moellendorffii), 5'ss of exon 1
GTATATGGAACTACGTCGTCACAGCTCACAAACCCACCAACGTCACTCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATTATCGCgtatctactcctattccctttcgttttcctagggtttcatttctt-ctctttcaatttcgtcaccgtttatttaccctttcacttcgttttttcttccag
|  | ||||| ||||||||||| || ||||| || ||||| || || ||||| ||||| || |||||||| || || || || ||||||||||| ||||||||   | |||    |  ||| | |   || | | |||   |||  |||  ||| || |  ||                                     
GCGTCTGGAATTACGTCGTCACTGCGCACAAGCCAACCAATGTGACGCACTCGTGCGTTGGAAATTTCACGAGCCCCCACGAGCTCAATCTCATCATCGCgta---agtcc----ctgtttagctcctcttgcgcttctcctctcactcaatcatttcctccag------------------------------------