1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CAGAGTTTCGTTGAATCTGCACTAAAACCCTACGCACACATCTTGGTGTAAGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGAgtaagtagtttcatttgccaactcttgaaaatcgggaaatttaattttcttcgtttactgaatcacatgtttcaattttgtttgacgtctaattgaagctcgtttaatggttctttcgcacaatagatcttttttcttttttaaatttatgtgtcattttcaatttctgtttgccccttcgcag
species | Glycine max |
transcript | GLYMA05G30430.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGTCCAATCGATATAGCAACAATGTCTACTCTTGAAATTGAAGCTCGAGA TGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGACEST: gi|193414190|gb|FK377876.1|FK377876
genomic: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGAgtaagtagtt ... cccttcgcagTGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGAC
EST: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGA TGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGACEST: gi|208216077|gb|GE008985.1|GE008985
genomic: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGAgtaagtagtt ... cccttcgcagTGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGAC
EST: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGA TGTCATCAAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGAEST: gi|193695429|gb|FK631283.1|FK631283
genomic: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGAgtaagtagtt ... cccttcgcagTGTCATCAAAA-TTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGA
EST: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGA TGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGACEST: gi|192300630|gb|FG989632.1|FG989632
genomic: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGAgtaagtagtt ... cccttcgcagTGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGAC
EST: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGA TGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGACEST: gi|208180491|gb|GD973748.1|GD973748
genomic: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGAgtaagtagtt ... cccttcgcagTGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGAC
EST: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGA TGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGACEST: gi|213609045|gb|DB958814.1|DB958814
genomic: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGAgtaagtagtt ... cccttcgcagTGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGAC
EST: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGA TGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGACEST: gi|193367431|gb|FK329541.1|FK329541
genomic: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGAgtaagtagtt ... cccttcgcagTGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGAC
EST: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGA TGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGAC
genomic: AGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGAgtaagtagtt ... cccttcgcagTGTCATCAAAATTGTGCTTCAGTTTTGCAAAGAGAATTCGTTGCATCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGTTTCGTTGAATCTGCACTAAAACCCTACGCACACATCTTGGTGTAAGTCCAATCGATATAGCAGCAATGTCTACGCTTGAAATTGAAGCTCGAGAgtaagtagtttcatttgccaactcttgaaaatcgggaaatttaattttcttcgtttactgaatcacatgtttcaattttgtttgacgtctaattgaagctcgtttaatggttctttcgcacaatagatcttttttcttttttaaatttatgtgtcattttcaatttctgtttgccccttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC