1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATTCTGAGAACTAAGAACAGAGAGCTGAAAGAAACTGCCATGGACGCTCTGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGgtttgctctcacttcccttcaagtttgtctttttatgtgtagtcacttcaagtaccgtgtttctcttctcaaattcgcatatgggtaccccaaattccca...
species | Glycine max |
transcript | GLYMA05G29700.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAGGAAACAAGTCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAG GCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTGEST: gi|209698264|gb|BW667553.1|BW667553
genomic: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGgtttgctctc ... tgttattcagGCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTG
EST: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAG GCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTGEST: gi|213618487|gb|DB963388.1|DB963388
genomic: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGgtttgctctc ... tgttattcagGCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTG
EST: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAG GCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTGEST: gi|151413137|gb|EV282945.1|EV282945
genomic: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGgtttgctctc ... tgttattcagGCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTG
EST: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAG GCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTG
genomic: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGgtttgctctc ... tgttattcagGCAGTAATAAAGCAGTTCAGCAGTAGTGGTTATGAGAGTTCAGATGTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCTGAGAACTAAGAACAGAGAGCTGAAAGAAACTGCCATGGACGCTCTGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGgtttgctctcacttcccttcaagtttgtctttttatgtgtagtcacttcaagtaccgtgtttctcttctcaaattcgcatatgggtaccccaaattccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG