1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGGAGAGAGAAAGTAGCAGATCCTCCATGGCCTCCACCAAGGAACGTGAAAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataataataatccattctcttaatttccatgttgagatttgagagtcaccacactgtgctgacctagatgttcaattagataatccttgttcctt...
species | Glycine max |
transcript | GLYMA05G29080.7 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|193610352|gb|FK562066.1|FK562066
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|254328641|gb|GR833013.1|GR833013
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|298178990|gb|HO024725.1|HO024725
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAGTGTGGAATTGACGGEST: gi|193401573|gb|FK368038.1|FK368038
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|5058166|gb|AI736642.1|AI736642
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|298198736|gb|HO042099.1|HO042099
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|193301431|gb|FK266828.1|FK266828
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|193575189|gb|FK530300.1|FK530300
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|5666653|gb|AI930689.1|AI930689
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|193462492|gb|FK426879.1|FK426879
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|6502305|gb|AW203678.1|AW203678
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|21889084|gb|BQ742297.1|BQ742297
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|254333164|gb|GR850414.1|GR850414
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|298191378|gb|HO038857.1|HO038857
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|208175353|gb|GD975992.1|GD975992
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|254347253|gb|GR853502.1|GR853502
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|193327746|gb|FK296371.1|FK296371
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|208214053|gb|GE008842.1|GE008842
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: CCGAACAAGCCGAACGCTATGAAG AAACGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|19270324|gb|BM886580.1|BM886580
genomic: CCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|193475090|gb|FK439813.1|FK439813
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|254336492|gb|GR842671.1|GR842671
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|151394632|gb|EV264503.1|EV264503
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|10843848|gb|BF067096.1|BF067096
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|192309537|gb|FK000969.1|FK000969
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|10231553|gb|BE800441.1|BE800441
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGGEST: gi|6482683|gb|AW201922.1|AW201922
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
EST: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAG AAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
genomic: AAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataat ... ggtgttttagAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAAACGTGGAATTGACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAGAGAGAAAGTAGCAGATCCTCCATGGCCTCCACCAAGGAACGTGAAAACTTCGTCTACGTCGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGgtataataataataatccattctcttaatttccatgttgagatttgagagtcaccacactgtgctgacctagatgttcaattagataatccttgttcctt
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