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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATGCTTGTCCCAAATCAGGGCCTGGTTATGCTTCACCACTAGCAGCCATTTCTGGTCCCAGAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaacaaaaacttcttcttgtgtctctataggtctgaaaatgctaattcagcttcattggaagaatagataggcattaagcagagatatgaagatggttt...

Basic information

species Glycine max
transcript GLYMA05G28400.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28400.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0029g00240.t01 (Vitis vinifera), 5'ss of exon 1
ATGGATGCTTGTCCCAAATCAGGGCCTGGTTATGCTTCACCACTAGCAGCCATTTCTGGTCCCAGAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaacaaaaacttcttcttgtgtctctataggtctgaaaatgctaattcagcttcattggaagaatagat-aggcattaagcagagatatgaagatggttt
  |  || |||   |||    ||||||||||||||  | ||||| | |||||| ||||||||||||||  |||| ||||||||||||   |||||  ||||||      | | || ||  |    ||  |  |       |  ||   ||  || | ||| |    |  | |  | ||   || |   |||   ||  | |
GAGATTGGTTGCTGCAAGAAGGGGCCTGGTTATGCCACTCCACTCGAAGCCATGTCTGGTCCCAGAGAATCTCTTCTTTATGTCACTTGCATCTATACAGgtatatgccattcctcctcctcctcctgcatcttcttcttta-tatcacatatttaatgggatttcaattcatcctttcttcataataatggtaattttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213598706|gb|DB964272.1|DB964272
EST:     CATTTCTGGTCCCAGAGAGACTCTCCTTTATGTCACTGCTATCTACTCAG                         GAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaacaaaaa ... tttaatacagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
EST: gi|7146995|gb|AW508917.1|AW508917
EST:     CATTTCTGGTCCCAGAGAGACTCTCCTTTATGTCACTGCTATCTACTCAG                         GAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaacaaaaa ... tttaatacagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA