1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACAGTATATCGTATACGCTGCAGTTTGATTGCATTTTACTTCAACCATGTCGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAGgtaattaaattaaacccatttgattaattcatttatttatatactccaaagtccagcacttattttcttgaaaaaaagtacagcaattcttacatcataa...
species | Glycine max |
transcript | GLYMA05G27960.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAG TACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTAEST: gi|23057239|gb|BU577914.1|BU577914
genomic: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAGgtaattaaat ... ttttgtacagTACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTA
EST: TAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAG TACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTAEST: gi|120496499|gb|EH224666.1|EH224666
genomic: TAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAGgtaattaaat ... ttttgtacagTACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTA
EST: GAGCATTCTCCAGAGTTCAGCACTTATGAAG TACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTAEST: gi|151403065|gb|EV272875.1|EV272875
genomic: GAGCATTCTCCAGAGTTCAGCACTTATGAAGgtaattaaat ... ttttgtacagTACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTA
EST: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAG TACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTAEST: gi|15000285|gb|BI321099.1|BI321099
genomic: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAGgtaattaaat ... ttttgtacagTACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTA
EST: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAG TACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTAEST: gi|23064557|gb|BU579330.1|BU579330
genomic: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAGgtaattaaat ... ttttgtacagTACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTA
EST: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAG TACATCTTTGAAACGAGTGCCTATCTAAAAGAGCATGAACAATTAAAGCTAEST: gi|120529047|gb|EH257181.1|EH257181
genomic: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAGgtaattaaat ... ttttgtacagTACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTA
EST: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAG TACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTAEST: gi|120496135|gb|EH224302.1|EH224302
genomic: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAGgtaattaaat ... ttttgtacagTACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTA
EST: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAG TACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTA
genomic: CGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAGgtaattaaat ... ttttgtacagTACATCTTTGAAACGAGTGCCTATCCAAAAGAGCATGAACAATTAAAGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGTATATCGTATACGCTGCAGTTTGATTGCATTTTACTTCAACCATGTCGGGTGATTTAGCATACAAGAGCATTCTCCAGAGTTCAGCACTTATGAAGgtaattaaattaaacccatttgattaattcatttatttatatactccaaagtccagcacttattttcttgaaaaaaagtacagcaattcttacatcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa