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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCAATCTTTGTGACAAGCCAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATGgtatgcatttcacctctagtcccttgagttgcttaatccgatccttttcatatcatgcttaatattattgcttgaacatctgtttctgcag

Basic information

species Glycine max
transcript GLYMA05G27940.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166298|gb|HO009269.1|HO009269
EST:     AATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGATAATCCAACCAAGT
genomic: AATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|18719541|gb|BM523201.1|BM523201
EST:     CTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: CTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|6566144|gb|AW233783.1|AW233783
EST:     GCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: GCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|6952016|gb|AW424084.1|AW424084
EST:     TAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: TAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|254324956|gb|GR834381.1|GR834381
EST:     GTGCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: GTGCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|13788824|gb|BG651415.1|BG651415
EST:     TAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: TAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|19271182|gb|BM887438.1|BM887438
EST:     CCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: CCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|5510348|gb|AI856673.1|AI856673
EST:     CTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: CTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|18848858|gb|BM567969.1|BM567969
EST:     AATCCCTAGTAAGCCGCCTTCC                         CTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: AATCCCTAGTAAGCCGCCAT-Ggtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|209696899|gb|BW660464.1|BW660464
EST:     AAGCCAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: AAGCCAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|12496577|gb|BG047134.1|BG047134
EST:     AGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: AGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|12496627|gb|BG047159.1|BG047159
EST:     GGTGCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: GGTGCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|15200901|gb|BI424589.1|BI424589
EST:     GCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: GCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|298176448|gb|HO026683.1|HO026683
EST:     CAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: CAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|26269293|gb|CA820356.1|CA820356
EST:     AAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: AAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|298178897|gb|HO024632.1|HO024632
EST:     TGACAAGCCAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: TGACAAGCCAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|6455153|gb|AW185836.1|AW185836
EST:     CTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: CTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|298172000|gb|HO021592.1|HO021592
EST:     GACAAGCCAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: GACAAGCCAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|298184857|gb|HO030070.1|HO030070
EST:     GACAAGCCAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAATCAAGT
genomic: GACAAGCCAATTCTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|7042501|gb|AW472395.1|AW472395
EST:     CTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: CTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|16347198|gb|BI972793.1|BI972793
EST:     CCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: CCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|213596920|gb|DB964127.1|DB964127
EST:     GTAGGTGCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: GTAGGTGCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|13562772|gb|BG550992.1|BG550992
EST:     AGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: AGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|27426431|gb|CA937951.1|CA937951
EST:     CCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: CCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|10709618|gb|BF009342.1|BF009342
EST:     GCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: GCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|5126866|gb|AI748602.1|AI748602
EST:     CTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: CTTTGTGTAGGTGCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|13312171|gb|BG405831.1|BG405831
EST:     GCTAAATCCCTAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: GCTAAATCCCTAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
EST: gi|19269566|gb|BM885822.1|BM885822
EST:     TAGTAAGCCGCCATG                         GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT
genomic: TAGTAAGCCGCCATGgtatgcattt ... gtttctgcagGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT