Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTTTATGATCCACCACCTCTCCAATTCCGTAACGGAACCGAAGCTTCCTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAGgtcaactttcaactttctccatttttttttcagttttgagaattcgaccatactagcgtgcgtgaaggaagaagaaagaaagaagaatgacttggttggtgctgttgcag

Basic information

species Glycine max
transcript GLYMA05G27900.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27900.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 1
CTGGTTTATGATCCACCACCTCTCCAATTCCGTAACGGAACCGAAGCTTCCTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAGgtcaa----ctttcaactttctccatttttttttcagttttgagaattcgaccatactagcgtgcgtgaaggaagaagaaagaaagaagaatgacttggttggtgctgttgcag
|| |||  | || |  ||| |    ||  | ||    ||  |  |    ||| | |  || ||||||||||| || |||||||| ||||| ||||||||||| ||    ||||| | |||     ||||||||||  |||| | | ||      |  | | |  | ||| | |   || |    ||                            
CTTGTTCCTAATTCTTCACTTAATGAAACCGGTTGAAGATGCTCAAAGACCTAGGGTTGTTACGCCATTTCCTGCCCCAAAGATCATGGATCTTCCTCAGgtaaagttgctttcgatttttcaattttttttttcgatttttaaatttt-----tttttgag-acttgatgaatcgagtattgcag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047913|gb|CA784554.1|CA784554
EST:     CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAG                         TTTGAAGGTGAGCACAAGGAGAGTTTTTATTGGGGAACTTATCGTCCTCAC
genomic: CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAGgtcaactttc ... gctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCAC
EST: gi|5058372|gb|AI736848.1|AI736848
EST:     CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAG                         TTTGAAGGTGAGCACAAGGAGAGTTTGTAT
genomic: CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAGgtcaactttc ... gctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTAT
EST: gi|209703431|gb|BW678246.1|BW678246
EST:     CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAG                         TTTGAAGGTGAGCACAAGGAGAGTTTCTATTGGGGAACTTATCGTCCTCAC
genomic: CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAGgtcaactttc ... gctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCAC
EST: gi|254323178|gb|GR835786.1|GR835786
EST:     CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAG                         TTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCAC
genomic: CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAGgtcaactttc ... gctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCAC