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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGCCAAATGGTGGTACTCAGCCTTCCACAACATCACCGCCATGGTTGGTGCTGGTGTCCTCACTCTTCCTTATGCCATGTCTATGATGGGTTGGTACgtacgtcctcttaaactttaaactatgatgctaacttgtacctagtcacactttcaatgactgcgtcatatattgaacgattgatgctttatagatgatatggaattaacatgaattgtgttgcattaacaag

Basic information

species Glycine max
transcript GLYMA05G27770.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27770.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g14100.1 (Oryza sativa), 5'ss of exon 1
----AAATGCCAAATGGTGGTACTCAGCCTTCCACAACATCACCGCCATGGTTGGTGCTGGTGTCCTCACTCTTCCTTATGCCATGTCTATGATGGGTTGGTACgtacgtcctcttaaactttaaactatgatgctaacttgtacctagtcacactttcaatgactgcgtcatatattgaacgattgatgctttatagatgatatggaattaacatgaattgtgttgcattaacaag
     || ||||| ||||||||||| || ||||||||| ||||||||||||| || || || |||||||  || || |  ||||||||   | | || |||||| ||  || |     | ||          | ||    |  |  |  |  ||   || |||  || ||  |  |||      ||     ||| |||                                       
CCCGCAACGCCAAGTGGTGGTACTCCGCTTTCCACAACGTCACCGCCATGGTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTGgtacataattcattcatcatttc---------tcct--tctccatttcatttcatcgtccatggatgagtgttcgattttgttttt----ttttgtag---------------------------------------

upper sequence: GLYMA05G27770.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G175321_T01 (Zea mays), 5'ss of exon 1
----AAATGCCAAATGGTGGTACTCAGCCTTCCACAACATCACCGCCATGGTTGGTGCTGGTGTCCTCACTCTTCCTTATGCCATGTCTATGATGGGTTGGTACgta-cgtcctcttaaact---ttaaactatgatgctaacttgtacctagtcacactttcaatgactgcgt-catatattga-acgattgatgctttatagatgatatggaattaacatgaattgtgttgcattaacaag----------------------
     || ||||||||||||||||| |||||||||||| |||| |||||||| || || || |||||||  || || || || |||||   | | || ||||||||  | |||   | | ||    | || | |  | ||  | |  | |      || | |       ||| | ||| | | |   |||| ||| | || ||  ||||       ||  ||| ||     ||| | ||| |                       
CCAGGAACGCCAAATGGTGGTACTCCGCCTTCCACAACGTCACGGCCATGGTCGGCGCCGGCGTCCTCAGCCTGCCCTACGCAATGTCCGAGCTCGGCTGgtacgtggcatccatctgatctggtcttaattgttgtcctcgcctcgatcggcatgcaatattgtgccttgcatgcatctgtcgtcgcgatcgatccatt-taactgatcgatggata-tatggatctgcatgcgtgaacgaactaacacaccgcatgcgtgcag

upper sequence: GLYMA05G27770.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G24400.1 (Arabidopsis thaliana), 5'ss of exon 1
----AAATGCCAAATGGTGGTACTCAGCCTTCCACAACATCACCGCCATGGTTGGTGCTGGTGTCCTCACTCTTCCTTATGCCATGTCTATGATGGGTTGGTACgtacgtcctcttaaactttaaactatgatgctaacttgtacctagtcacactttcaatgactgcgtcatatattgaacgattgatgctttatagatgatatggaattaacatgaattgtgttgcattaacaag
    ||| || || ||||||||||| || || |||||  ||||||||||||||||||||||||| || |   | || || || ||||| |   | || |||||      |    | || ||       || ||  |||  |   |||  | |   ||| |   |     | ||    |||    ||||||  ||| ||                                       
CCAGAAACGCTAAGTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTTAGCTTGCCCTACGCTATGTCCAATCTCGGATGgtatactaatttgttgaatct------gataatcttaatct---cct--ttatgttttaatccatgatctgat---ctgagtttttgatgtattacag---------------------------------------

upper sequence: GLYMA05G27770.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G67640.1 (Arabidopsis thaliana), 5'ss of exon 1
----AAATGCCAAATGGTGGTACTCAGCCTTCCACAACATCACCGCCATGGTTGGTGCTGGTGTCCTCACTCTTCCTTATGCCATGTCTATGATGGGTTGGTACgtacgtcctct---taaactttaaactatgatgctaacttgtacctagtcacactttcaatgactgcgtcatatattgaacgattgatgctttatagatgatatggaattaacatgaattgtgttgcattaacaag
    ||||||||| ||||||||||| || || |||||  ||||||||||||| || |||||||| ||||   | ||||| ||||||||||   | || |||||  ||     |||   || |  |  || |||     ||     |  |||   |||| ||||||       |  || | | ||   ||||||                                               
CTAGAAATGCCAAGTGGTGGTACTCTGCGTTTCACAATGTCACCGCCATGGTCGGGGCTGGTGTACTCAGCTTACCTTACGCCATGTCTAATCTTGGATGgtatatatccaatctagctacatatataaatatctcattagaaaatctctatatacacgttcaatattaatat--tacactcaatt-ttgatggcag-------------------------------------------

upper sequence: GLYMA05G27770.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S5_176V6.1 (Physcomitrella patens), 5'ss of exon 2
----AAATGCCAAATGGTGGTACTCAGCCTTCCACAACATCACCGCCATGGTTGGTGCTGGTGTCCTCACTCTTCCTTATGCCATGTCTATGATGGGTTGGTACgtacgtcctcttaaactttaaactatgatgctaacttgtacctagtcacactttcaatgactgcgtcatatattgaacgattgatgctttatagatgatatgga-attaacatgaattgtgttgcattaacaag
     || ||||||||||||||||| |||||||||||  | ||||| ||||| || || || || ||     | ||  | ||||||       |    ||||  |   | |  || |   |||    | | || |   ||   |   |  |||| |||||        ||   |  |||    | ||  ||   |   | |  ||||  ||| ||||| |                  
ATCGCAAAGCCAAATGGTGGTACTCCGCCTTCCACAATGTTACCGCAATGGTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgag---ggctcctcacgttttg---tctaat-ccgtctcagagtca--cacagtttca-------tgttgcagtttgcggcagtgg-gcacaagtaacggaatggctattcacatgcag-----------------

upper sequence: GLYMA05G27770.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ10950 (Selaginella moellendorffii), 5'ss of exon 2
----AAATGCCAAATGGTGGTACTCAGCCTTCCACAACATCACCGCCATGGTTGGTGCTGGTGTCCTCACTCTTCCTTATGCCATG-TCTATGATGGGTTGGTACgtacgtcctcttaaactttaaactatgatgctaacttgtacctagtcacactttcaatgactgcgtcatatattgaacgattgatgctttatagatgatatggaattaacatgaattgtgttgcattaacaag
     || ||||| ||||||||||| |||||||| ||  |||||||||||||||| ||||| || || |  || || |  || ||| |||||  |||  ||||| || | ||          ||    |     |||| |||  |  | | |  | |||| ||  |    |    | |||  |  |   || ||| |   |  |                                  
CCAGGAACGCCAAGTGGTGGTACTCGGCCTTCCATAATGTCACCGCCATGGTTGGAGCTGGAGTTCTTAGCCTCCCCTCGGCGATGGTCTATCTTGG-CTGgtaagttcttcgcagctcttcttcgtttcaatcgctagcttcaaattcg-cttagtttcgat--ccaaat----tcttggtcagtcagtgttttctcattcgtgctc------------------------------