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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATGGCGACCCTTTTCCAGGGATTGGGAGTTGTGAACCCGTCATTGTCTTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCGTACATCCCTCTCTGgtttgcttcttaaatttctttcctttttattttttccccttcaaattgcttattgagattttagtttcattctgtgtgcaataattgattggttcag

Basic information

species Glycine max
transcript GLYMA05G27260.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193430631|gb|FK392387.1|FK392387
EST:     TTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCGTACATCCCTCTCTG                         AGAGAAAAGATGGCATATTTGTAGTCAGAT
genomic: TTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCGTACATCCCTCTCTGgtttgcttct ... attggttcagAGAGAAAAGATGGCATATTTGTAGTCAGAT
EST: gi|209715884|gb|BW650897.1|BW650897
EST:     TTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCGTACATCCCTCTCTG                         AGAGAAAAGAT
genomic: TTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCGTACATCCCTCTCTGgtttgcttct ... attggttcagAGAGAAAAGAT
EST: gi|120530967|gb|EH259100.1|EH259100
EST:     TTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCGTACATCCCTCTCTG                         AGAGAAAAGATGGCATATTTGTAGTCAGATCTGATGCAAGGGTAAGCAGCA
genomic: TTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCGTACATCCCTCTCTGgtttgcttct ... attggttcagAGAGAAAAGATGGCATATTTGTAGTCAGATCTGATGCAAGGGTAAGCAGCA
EST: gi|192321464|gb|FK012856.1|FK012856
EST:     TTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCGTACATCCCTCTCTG                         AGAGAAAAGATGGCATATTTGTAGTCAGATCTGATGCAAGGGTAAGCAGCA
genomic: TTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCGTACATCCCTCTCTGgtttgcttct ... attggttcagAGAGAAAAGATGGCATATTTGTAGTCAGATCTGATGCAAGGGTAAGCAGCA