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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCAACTGGTGGCGGGACATCAACCGCTCCCCGCTCTGGCAGGATCGCATTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtcgtttctgccagatttctatttccacttccgttagggtttcctttccaattactatttaattgataattatgataattgtaatattgtgatggctttag

Basic information

species Glycine max
transcript GLYMA05G26630.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193545595|gb|FK500798.1|FK500798
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTCCAATTAGTGCGAATACAATTG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTG
EST: gi|213600472|gb|DB970324.1|DB970324
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|254327807|gb|GR834772.1|GR834772
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|213593691|gb|DB971713.1|DB971713
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|209706563|gb|BW676111.1|BW676111
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|192324953|gb|FK015404.1|FK015404
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|5606771|gb|AI900869.1|AI900869
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|26047656|gb|CA784373.1|CA784373
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|213602225|gb|DB958485.1|DB958485
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|151408492|gb|EV278300.1|EV278300
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCCAACTGGTGGCGGGACATCAACCGCTCCCCGCTCTGGCAGGATCGCATTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtcgtttctgccagatttctatttccacttccgttagggtttcctttccaattactatttaattgataattatgataattgtaatattgtgatggctttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC