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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACAATGCCGAGCAGAGACTCGTTCGCACCGGTCCCCGAATCGATTCCTTCGACGTCGAAGCCCTTGAGGTTCCCGGCGCTCACAGAAACGACTACGAGgtcattcccaaactttaaattgaggcattggattggattagggatgtcactgttgtgcattatcttgtgttgtttgcattctcttattgcaggatgttag...

Basic information

species Glycine max
transcript GLYMA05G24530.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G24530.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0142g00250.t01 (Vitis vinifera), 5'ss of exon 1
GGACAATGCCGAGCAGAGACTCGTTCGCACCGGTCCCCGAATCGATTCCTTCGACGTCGAAGCCCTTGAGGTTCCCGGCGCTCACAGAAACGACTACGAGgt-cattcccaaa---------ctttaaattgaggcattg--gattggattagggatgtcactgttgtgcattatcttgtgttgtttgcattctcttattgcaggatgttag
 || ||||  |||| ||   |  | ||||| || ||| |||||||||||||||| ||||| ||||| ||| |||||||||| || || ||||| || |||||   ||                |||   |||  |  | |  | ||| ||     ||         | | |  |   |    || | |   | | || |||           
TGAGAATGGAGAGCCGAAGTTGATCCGCACTGGGCCCAGAATCGATTCCTTCGATGTCGAGGCCCTCGAGATTCCCGGCGCACAGAGGAACGATTATGAGgtgtgtttttggggcttttttttttttttttgttgtttcgttgcttgaatggaaaattggggaaacgggaaagaaaataaaatgctgg--atgttttgttgt----------