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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCATACTTTTTAGGATGGCAGGAATACGAGAAAAACCCTTACGACAAGGTCCATAACCCCAAAGGGATTATCCAAATGGGTCTCGCAGAGAATCAGgtagttcatttttctcacaagcccaatctttctacaaccttataacaaactttaatgttgcataacatgtttgactcacaaaatttaattatctttttgcag

Basic information

species Glycine max
transcript GLYMA05G23020.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G23020.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G49700.1 (Arabidopsis thaliana), 5'ss of exon 1
TTCTTCATACTTTTTAGGATGGCAGGAATACGAGAAAAACCCTTACGACAAGGTCCATAACCCCAAAGGGATTATCCAAATGGGTCTCGCAGAGAATCAGgtagttcatttttctcacaagcccaatctttctacaaccttataacaaactttaat-gttgcataacat-gtttgactcacaaaatttaatta-tctttttgcag
 ||||| ||||| || |||||| | ||||||||||| |||||||||||| |  || | ||||| || |||||||| ||||||||||| || || |||||||||  |          | ||   | |  |||| || |    |   ||| |||||||  ||| |||   | |  ||  | | |  || |  ||| | |   |||||
CTCTTCCTACTTCTTGGGATGGGAAGAATACGAGAAGAACCCTTACGACGAAATCAAGAACCCTAATGGGATTATTCAAATGGGTCTTGCCGAAAATCAGgtaact----------ataactacgagttttcgaccaatcgac--caatctttaattattgtatatttttgggtgtttaatacgatgtttttaatatgcatgcag

upper sequence: GLYMA05G23020.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G37770.1 (Arabidopsis thaliana), 5'ss of exon 1
TTCTTCATACTTTTTAGGATGGCAGGAATACGAGAAAAACCCTTACGACAAGGTCCATAACCCCAAAGGGATTATCCAAATGGGTCTCGCAGAGAATCAGgtagttcatttttctcacaagcccaatctttctacaaccttataacaaactttaatgttgcataacat---gtttgactcacaaaatt--taattatct---ttttgcag
|||||| || ||||  || ||| | || || || ||||| ||||||||| || || | |||||  | || ||||||||||||||||| ||||| ||||||||| ||||||   || |  | |  ||     | ||   |||   | ||  ||  ||  || || | ||   || | |      |  ||  || || | |   | ||||||
TTCTTCGTATTTTTGGGGTTGGGAAGAGTATGAAAAAAATCCTTACGACGAGATCAAGAACCCAGACGGCATTATCCAAATGGGTCTAGCAGAAAATCAGgtaattcattacactaatcatcaaaa---cgcaacgtactttagataagtttcgatcatgtatgatataaagtataatatcttacgttcttacttgtttatatcttgcag

upper sequence: GLYMA05G23020.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0840g00010.t01 (Vitis vinifera), 5'ss of exon 1
TTCTTCATACTTTTTAGGATGGCAGGAATACGAGAAAAACCCTTACGACAAGGTCCATAACCCCAAAGGGATTATCCAAATGGGTCTCGCAGAGAATCAGgt-agttcatttttctcacaagcccaat-ctttctacaaccttataacaaactttaatgttgcataacatgtttgactcacaaaatttaattatctttttgcag
|||   ||| ||  | |||||| ||||||||||||||||| | ||  || ||||| | ||||| |  || ||||| || |||||||| |||||||||||||| ||   ||||| ||   ||    | | |  |||   |  |  |  ||||    ||||  |      || ||   || |     |                  
TTCAGAATATTTCCTGGGATGGGAGGAATACGAGAAAAACGCATATCACGAGGTCGAGAACCCGAGTGGAATTATTCAGATGGGTCTGGCAGAGAATCAGgttagaagattttccttttaaaaaaactacaatctttgatttcttgccaaa----aatgcagtcccttattttcatcttattgcgtcatgcag-----------