Sequence
atgc intronic sequence ATGC exonic sequenceGCCGCCCCGGCTCGTCCTCCAAGGCCCGCGTCTACGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaacataccggattctccttcctcttttcttttttcttttttcccttccattttcaaatacctttagccttttatttttcattttattttttattttggataacataaatgtctttttttcttccttttccaaagtgaaaggaaatttagggttgttgttattgttgttgttttttag
Basic information
species | Glycine max |
transcript | GLYMA05G22320.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G22320.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G112056_T01 (Zea mays), 5'ss of exon 1
GCCGCCCCGGCTCGTCCTCCAAGGCCCGCGTCTACGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaa-cataccggattctccttcctcttttcttttttcttttttcccttccattttcaaatacctttagccttttatttttcattttattttttattttggataacataaatgtctttttttcttccttttccaaagtgaaaggaaatttagggttgttgttattgttgttgttttttag
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AACTCGGTGGTGCCGCCTCGGTGGCGCGCGTCTACGCCGATGCCAACGCCCAGCGCCCCAAGGAGTACTGGGACTACGAGTCGCTCGACATCCAGTGGGGgtaggcacatggagctggagctcggctttacactttgatcc--------ccagatttgaatggtgtaagg-ttttatttctgattcgtctgtccgtgcag--------------------------------------------------------------------------------
upper sequence: GLYMA05G22320.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G138774_T01 (Zea mays), 5'ss of exon 2
GCCGCCCCGGCTCGTCCTCCAAGGCCCGCGTCTACGCCGATGTCAACGTCGTTCGCCCC-AAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaa-cataccggattctccttcctcttttcttttttcttttttcccttccattttcaaatacctttagccttttatttttcattttattttttattttggataacataaatgtctttttttcttccttttccaaagtgaaaggaaatttagggttgttgttattgttgttgttttttag
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-ACCCGGTGGCGTCGCCTCGGTGGCGCGCGTCTACGCCGATGCCAACGCCCAGCGCCCCCAAGGAGTACTGGGACTACGAGTCGCTCGACATCCAGTGGGGgtaggcacacgaagctggagctcggctttacactgtgatcc--------ccagatttgaatggtgtaagg-ttttatttctgatgcgtctgtccatgcag--------------------------------------------------------------------------------
upper sequence: GLYMA05G22320.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G154799_T01 (Zea mays), 5'ss of exon 1
GCCGCCCCGGCTCGTCCTCCAAGGCCCGCGTCTACGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaacataccggattctccttcctcttttcttttttcttttttcccttccattttcaaatacctttagccttttatttttcattttattttttattttggataacataaatgtctttttttcttccttttccaaagtgaaaggaaatttagggttgttgttattgttgttgttttttag
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AACCCGGTGGCGCCGCCTCGGTGGCGCGCGTCTACGCCGACGCTAACGCCCAGCGCCCCAAGGAGTACTGGGACTACGAGTCGCTCGACATCCAGTGGGGgtaggcgcacggag----ctggagctcggctttacactgtgatccc---cagatttgaatggtgtaagg-ttttatttctgatgcgtctgtccgtgcag--------------------------------------------------------------------------------
upper sequence: GLYMA05G22320.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G23070.1 (Arabidopsis thaliana), 5'ss of exon 1
GCCGCCCCGGCTCGTCCTCCAAGGCCCGCGTCTACGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaacataccggattctccttcctcttttcttttttcttttttcccttccattttcaaatacctttagccttttatttttcattttattttttattttggataacataaatgtctttttttcttccttttccaaagtgaaaggaaatttagggttgttgttattgttgttgttttttag
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GGCGTGCCGGTGCGCCGTCGAAAGCTAGGGTTTACGCTGATGTCAACGTTGTTAGACCTAAGGACTATTGGGATTACGAGTCCCTTGCTGTTCAATGGGGgtatatcttcagattcttctctaattaaacctaattacgtcgatttctagatgtt----tgcctttggttatagattggtt-tgggattggttgttctgga-atca-------------------------------------------------------------------------
upper sequence: GLYMA05G22320.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0129g00270.t01 (Vitis vinifera), 5'ss of exon 1
GCCGCCCCGGCTCGTCCTCCAAGGCCCGCGTCTACGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaacataccggattctccttcctcttttcttttttcttttttcccttccattttcaaatacctttagccttttatttttcattttattttttattttggataacataaatgtctttttttcttccttttccaaagtgaaaggaaatttagggttgttgttattgttgttgttttttag
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GCCGCCCCGGCGCTCCCTCCAAGGCTAGGGTTTACGCTGACATCAATGTGATCCGGCCCAAAGAGTATTGGGACTACGAGTCCCTCACCGTTCAATGGGGgtaatagtttggttacc-----------------ttaaagatcccgtttagcttccaaggaaatgtaggaatggattttcaatt--atttgggactcagggcctcgagaacctctaatc------------------------------------------------------------
upper sequence: GLYMA05G22320.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S165_119V6.1 (Physcomitrella patens), 5'ss of exon 2
GCCGCCCCGGCTCGTCCTCCAAGGCCCGCGTCTACGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaacataccggattctccttcctcttttcttttttcttttttcccttccattttcaaatacctttagccttttatttttcattttattttttattttggataacataaatgtctttttttcttccttttccaaagtgaaaggaaatttagggttgttgttattgttgttgttttttag
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GACGGCCAGGTGTTATGTCCAAGGCCCGGGTTTACACAGATGTGAATGTCCAACGTCCGAAAGATTATTGGGACTACGAGGCCCTCACCGTCCAATGGGGgtaagttccatggctattcgattcactccctttatgcttccttaattccaatgttcta-----cagagatatctgggcacggtgaggaatcatcgactagaaacc--------------------------------------------------------------------------
upper sequence: GLYMA05G22320.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ28543 (Selaginella moellendorffii), 5'ss of exon 1
GCCGCCCCGGCTCGTCCTCCAAGGCCCGCGTCTACGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaacataccggattctccttcctcttttcttt---tttcttttttcccttccattttcaaatacctttagccttttatttttcattttattttttattttggataacataaatgtctttttttcttccttttccaaagtgaaaggaaatttagggttgttgttattgttgttgttttttag
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GTGGCCCCGGCGCCATGTCCAAGGCCCGGATATACGCCGATGTGAACGTGCTGCGCCCAAAGGAGTACTGGGACTACGAGTCTCTCTCGGTGGAGTGGGGgtgaggcttttgtttcgtttttttgttggatctagatctcttcttcttgtttgggtggcag-------------------------------------------------------------------------------------------------------------------------
upper sequence: GLYMA05G22320.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ20478 (Selaginella moellendorffii), 5'ss of exon 1
GCCGCCCCGGCTCGTCCTCCAAGGCCCGCGTCTACGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaacataccggattctccttcctcttttcttt---tttcttttttcccttccattttcaaatacctttagccttttatttttcattttattttttattttggataacataaatgtctttttttcttccttttccaaagtgaaaggaaatttagggttgttgttattgttgttgttttttag
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GTGGCCCCGGCGCCATGTCCAAGGCCCGGATATACGCCGATGTGAACGTGCTGCGCCCAAAGGAGTACTGGGACTACGAGTCTCTCTCGGTGGAGTGGGGgtgaggcttttgtttcgtttttttgttggatctagatctcttcttcttctttgggtggcag-------------------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10847160|gb|BF071497.1|BF071497EST: GTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGG GGAGCAAGATGATTATGAGGTGGTGAGGAAGGTGGGT
genomic: GTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaacatacc ... tgttttttagGGAGCAAGATGATTATGAGGTGGTGAGGAAGGTGGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCGCCCCGGCTCGTCCTCCAAGGCCCGCGTCTACGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaacataccggattctccttcctcttttcttttttcttttttcccttccattttcaaatacctttagccttttatttttcattttattttttattttggataacataaatgtctttttttcttccttttccaaagtgaaaggaaatttagggttgttgttattgttgttgttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA