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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcag

Basic information

species Glycine max
transcript GLYMA05G14330.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g41180.1 (Oryza sativa), 5'ss of exon 2
GTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcag
||||||| || || ||||| ||||| || |||||||| |||||||| |||||||| || |||||| | |||||||| |  || |||||||||||||||||||| | | |||   | |   |      | || ||||||   ||    ||||    |  |    || |   ||||     ||  || |||                                                                                     
GTAGCATAGGGACTGGTTATGATCTTTCCGTCACCACCTTCTCCCCAGATGGCCGTGTCTTCCAGGTTGAGTATGCTGGCAAGGCCGTCGACAACAGCGGgttcg-atttagtttcaccctcccctctgtt-ttattaccctt----ttttgggctgttcaactttatgctgaagttctgatgttttttgcag---------------------------------------------------------------------------------

upper sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 2
GTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcag
| ||||| || ||||| |||||||| || || ||||| ||||| || ||||| ||||| |||||| | ||||||||| | || || ||||||||||||||||| |   | |    |    ||  | |  ||  | ||  ||       ||    |  |||    |  ||||    ||    |||    ||||| || | |  |                                                                       
GCAGCATAGGCACAGGATACGATCTGTCCGTTACCACCTTCTCTCCGGATGGTCGCGTCTTCCAGGTTGAGTATGCCACGAAGGCTGTCGACAACAGCGGgttcggtttaactgctcccctttctttccttccttttgctaccgcttcttcctttctgtg----tgcaattatgtaatgacgttc---taatatttgttaacag----------------------------------------------------------------------

upper sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G445100_T01 (Zea mays), 5'ss of exon 2
GTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcag
| ||||| || |||||||| ||||| || |||||||| ||||| || ||||||||||| |||||| ||||||||||| | || || ||||||||||||||||| |     |      |     ||  |||| || || ||  |  |||| |     |||  | |   |||   |   | ||    ||    || || ||| ||                                                                       
GCAGCATAGGCACAGGTTATGATCTGTCTGTCACCACCTTCTCTCCCGATGGCCGCGTCTTCCAGGTCGAGTATGCCACGAAGGCTGTCGACAACAGCGGgttagattccactgcc-tcccacttcctatt-ttgtt-ttgcttgacttgttc-cccgttttctatgaatcttattgatgaagccat--ggtatttgtgaatag----------------------------------------------------------------------

upper sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G008623_T01 (Zea mays), 5'ss of exon 2
GTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcag
| ||||| || |||||||||||||| || |||||||| |||||||| ||||| || || |||||| |||| |||||  | || |||||||||||||||||||| |     |      |      |  |||| |  || ||  |  |    |  | |  |    ||     ||    |   | | |  ||  |  |  | | |    |  | ||| | ||  |                                                    
GCAGCATAGGCACAGGTTACGATCTGTCTGTCACCACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattccactgcc-tcccacctcctattgt-gtttttgcttcaagccttcacttatttccttttctctgttctatgtaatcttattggtt-tggttaatgccatggtatttgtgaacag----------------------------------------------------

upper sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G130398_T01 (Zea mays), 5'ss of exon 2
GTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcag
| ||||| || |||||||| ||| | || ||||| || |||||||| ||||| || || |||||| ||||||||||| | || |||||||||||||||||||   | | |  || |     || | || ||  |    ||||||| |  ||   |||   ||| ||    || ||        ||| ||  | ||| |   | |  |  | ||| | ||  |                                                    
GCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtc--tgcctcccacttcctatagtgtt-ttgcttcacttattattccctt---ttctctgttcta----tgtaat------cttacttggttattgttgatgtcatggtatttatgaacag----------------------------------------------------

upper sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G27020.1 (Arabidopsis thaliana), 5'ss of exon 1
GTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcag
||||||| || || || |||||||| || |||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||   |  | ||||  |  |   | ||     | ||| || |   |   |||     | | |||| |   |    || |||  |||   |     | || | ||| ||     |||   |||     ||||| | || | ||                            
GTAGCATTGGAACTGGGTACGATCTCTCCGTCACCACTTTCTCTCCCGATGGCCGTGTTTTCCAGATCGAGTACGCCGCTAAAGCTGTCGACAACAGTGGgttagt---tggctttatcttcttcgatcttcgccct-ttagtaga---tcggatttagcttctgaaaactttga----gattttggttatcgacacgaattagggtttgtta----aaagtctttccctttttttttcttcgcag----------------------------

upper sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 1
GTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcag
| ||||| || || || |||||||| || |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||||||  | ||     || |  || || || || || ||     || |   |    || || |   ||| |  |      |||  | |    |   | |  | |                                                                        
GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctccatcttctctttttttttttttttttttaacctaaatcatctgtttggttgc--taagaaagggtgggagaaatgaacggaacctcaaaatt------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23726817|gb|BU761411.1|BU761411
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|23726961|gb|BU761493.1|BU761493
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|192295112|gb|FG986831.1|FG986831
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|208173911|gb|GD967256.1|GD967256
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|151400518|gb|EV270332.1|EV270332
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|15200376|gb|BI424317.1|BI424317
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|298165082|gb|HO011131.1|HO011131
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|213590582|gb|DB973327.1|DB973327
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|151409026|gb|EV278834.1|EV278834
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|208112458|gb|GD910181.1|GD910181
EST:     CGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: CGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|13790126|gb|BG652717.1|BG652717
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAN-TGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|151410622|gb|EV280437.1|EV280437
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|16348120|gb|BI973715.1|BI973715
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|192303719|gb|FG994557.1|FG994557
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|298162963|gb|HO011696.1|HO011696
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|298195782|gb|HO044173.1|HO044173
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: gi|193423628|gb|FK387293.1|FK387293
EST:     GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGG                         GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtactt ... tttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG