Sequence
atgc intronic sequence ATGC exonic sequenceGGGTGTCTCTGGTATTGTGGTGGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCTGCTCGGTCACGGGCAAGAAGACAGgttatatacatttgtgtgtgagtgtgtggtgttatttctttgaaatctatttgtttttttttaatttgatacaaggtcttatctatgtcaatggacag
Basic information
species | Glycine max |
transcript | GLYMA05G13890.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G13890.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ29498 (Selaginella moellendorffii), 5'ss of exon 1
GGGTGTCTCTGGTATTGTGGTGGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCTGCTCGGTCACGGGCAAGAAGACAGgttatatacatttgtgtgtgagtgtgtggtgttatttctttgaaatctatttgtttttttttaatttgatacaaggtcttatctatgtcaatggacag
| | || | | | || |||||||| |||||||||||| |||||| ||||||||| || || ||||| || || || |||||||| || || | || || | || || || | | | || | || | | | ||||||||||| |
GAGGAGCTTGGATCTCGTCGTGGAGAAGACTGTGGAGAGGCGGCAGAGGAGGATGATCAAGAACAGGGAGTCGGCGGCGCGGTCACGAGCGAGGAAGCAAgtaagtcgcacttttgaccaaagaggctttttttctactctt--ttttccttgttttttttgcag---------------------------------
upper sequence: GLYMA05G13890.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ28072 (Selaginella moellendorffii), 5'ss of exon 1
GGGTGTCTCTGGTATTGTGGTGGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCTGCTCGGTCACGGGCAAGAAGACAGgttatatacatttgtgtgtgagtgtgtggtgttatttctttgaaatctatttgtttttttttaatttgatacaaggtcttatctatgtcaatggacag
| | || | | | || |||||||| |||||||||||| |||||| ||||||||| || || ||||| || || || |||||||| || || | || || | || || || || | || || || || | | ||| | ||| ||| | |||
GAGGAGCTTGGATCTCGTCGTGGAGAAGACTGTGGAGAGGCGGCAGAGGAGGATGATCAAGAACAGGGAGTCGGCGGCGCGGTCACGAGCGAGGAAGCAAgtaagtcgcacttttgaccaag---gaggcttttttcct-----acccttttttctttgttttacttgcag---------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51336483|gb|CO980349.1|CO980349EST: GGATGATTAAAAATAGGGAATCTGCTGCTCGGTCACGGGCAAGAAGACAG GCATACACACAAGAACTGGAGATTAAAGTTTCACGATTAGAAGAGGAGAAT
genomic: GGATGATTAAAAATAGGGAATCTGCTGCTCGGTCACGGGCAAGAAGACAGgttatataca ... caatggacagGCATACACACAAGAACTGGAGATTAAAGTTTCACGATTAGAAGAGGAGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTGTCTCTGGTATTGTGGTGGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCTGCTCGGTCACGGGCAAGAAGACAGgttatatacatttgtgtgtgagtgtgtggtgttatttctttgaaatctatttgtttttttttaatttgatacaaggtcttatctatgtcaatggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG