Sequence
atgc intronic sequence ATGC exonic sequenceATGGGAAGCAGAAAGGAAGAAGAGAGGAACGAGAAAATTATTAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATAAACTGCAACAGCCTGgtaagttcgactcctgtttttgaatttgattttctttttcttcttatttggtttggtaaaagtatgttttagtttcaataccttttttatgttttgagtt...
Basic information
species | Glycine max |
transcript | GLYMA05G12780.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G12780.2 (Glycine max), 5'ss of exon 1
lower sequence: AT1G08680.2 (Arabidopsis thaliana), 5'ss of exon 1
----ATGGGAAGCAGAAAGGAAGAAGAGAGGAACGAGAAAATTATTAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATAAACTGCAACAGCCTGgtaagttcgactc-ctgtttttgaatttgattttctttttcttcttatttggtttggtaaaagtatgttttagtttcaataccttt---tttatgttttgagtt
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AATGATGGGAAGTAAAAGAGAAGAAGAGAGGAACGAGAAGATTATTCGTGGGCTTATGAAGCTTCCACCGAATCGTCGTTGTATCAACTGCAATAGCCTTgtaattttatctaactctctctcccttttaccaatttttg--tcttccttcaaaggcttaatttgttctctaaatt--gttcctgtgagtgtatcaactgagtt
upper sequence: GLYMA05G12780.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0056g00910.t01 (Vitis vinifera), 5'ss of exon 1
----ATGGGAAGCAGAAAGGAAGAAGAGAGGAACGAGAAAATTATTAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATAAACTGCAACAGCCTGgtaagttcgactcctgtttttgaatttgattttctttttcttcttatttggtttggtaaaagtatgttttagtttcaataccttttttatgttttgagtt------
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GAGGATGAGTAGTCGAAAGGAAGAAGAGAGGAATGAGAAGATCATCCGAGGCCTCATGAAGCTGCCTCCGAATCGAAGATGCATCAACTGCAACAGCTTAgtaag---gattttttttttt--ttttttttggtttatttattttatttagtt-aattaatttattttttgatttggaggggtttgtgttggtggttgtttcttggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208168103|gb|GD970809.1|GD970809EST: GTCTCATGAAGCTTCCGCCGAATCGAAGATGTATAAACTGCAACAGCCTG GGACCACAATATGTATGTACTAGTTTTTGGACTTTCATTTGTATGACATGC
genomic: GTCTCATGAAGCTTCCGCCGAATCGAAGATGTATAAACTGCAACAGCCTGgtaagttcga ... atttgtacagGGACCACAATATGTATGTACGAGTTTTTGGACTTTCATTTGTATGACATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGGAAGCAGAAAGGAAGAAGAGAGGAACGAGAAAATTATTAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATAAACTGCAACAGCCTGgtaagttcgactcctgtttttgaatttgattttctttttcttcttatttggtttggtaaaagtatgttttagtttcaataccttttttatgttttgagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG