Sequence
atgc intronic sequence ATGC exonic sequenceCCGTGGCTAAGTCAGAATCGTTCCCAATGAAAAGCCAATGGAAGAAAGGGAAACTTATTGGGCGTGGGACGTTTGGAAGCGTTTATGTCGCAACCAATAGgtatgtaaatgtttcgtgagtattttaagatcttctgttgtctcttttctaaggctctgaaacagatgctgcttcttgacag
Basic information
species | Glycine max |
transcript | GLYMA05G10050.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G10050.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 1
CCGTGGCTAAGTCAGAATCGTTCCCAATGAAAAGCCAATGGAAGAAAGGGAAACTTATTGGGCGTGGGACGTTTGGAAGCGTTTATGTCGCAACCAATAGgtatgtaaatgtttcgtgagtatttta--agatcttctgttgtc-tcttttctaaggctc-tgaaacagatgctgcttcttgacag--------------
| ||||| |||| || || ||||||| || ||||||| | ||||| || || ||||||||||| || |||||||| |||||||| || || ||| ||||||| ||| | | | ||| | | |||||| | | ||| | | | | || | | ||
TTATTGCTAAAACAGAGTCATTTCCAATGACAACCCAATGGCAAAAAGGAAAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACGAATCGgtatgtgaatttgacatattcattctgttaatgtctctgttacagtaaactttaatatttatttagtatttgtttttgttttttgtttttcctctaacag
upper sequence: GLYMA05G10050.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 2
CCGTGGCTAAGTCAGAATCGTTCCCAATGAAAAGCCAATGGAAGAAAGGGAAACTTATTGGGCGTGGGACGTTTGGAAGCGTTTATGTCGCAACCAATAGgtatgtaaatgtttcgtgagtatttta--agatcttctgttgtc-tcttttctaaggctc-tgaaacagatgctgcttcttgacag--------------
| ||||| |||| || || ||||||| || ||||||| | ||||| || || ||||||||||| || |||||||| |||||||| || |||||| ||||||| ||| | | | ||| | | |||||| | | ||| | | | | || | | ||
TTATTGCTAAAACAGAGTCATTTCCAATGACAACCCAATGGCAAAAAGGAAAGCTCATTGGGCGTGGAACATTTGGAAGTGTTTATGTTGCCACCAATCGgtatgtgaatttgacatattcattctgttaatgtctctgttacagtaaactttaatatttatttagtatttgtttttgttttttgtttttcctctaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10710644|gb|BF010362.1|BF010362EST: AAACTTATTGGGCGTGGGACGTTTGGAAGCGTTTATGTCGCAACCAATAG GGAAACCGGAGCATTATGTGCAATGAAGGAAGTAGAGTTATTTCCTGATGA
genomic: AAACTTATTGGGCGTGGGACGTTTGGAAGCGTTTATGTCGCAACCAATAGgtatgtaaat ... ttcttgacagGGAAACCGGAGCATTATGTGCAATGAAGGAAGTAGAGTTATTTCCTGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGTGGCTAAGTCAGAATCGTTCCCAATGAAAAGCCAATGGAAGAAAGGGAAACTTATTGGGCGTGGGACGTTTGGAAGCGTTTATGTCGCAACCAATAGgtatgtaaatgtttcgtgagtattttaagatcttctgttgtctcttttctaaggctctgaaacagatgctgcttcttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG