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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCATGGCACCCACGACTATCACCAGGAAACCCTCAACAATCTCAAGACTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttcttctattcatgtagccaatgattttgatgataataagcatggtattggtctacatttcttgtctttttctgatctgttgtttccatataact...

Basic information

species Glycine max
transcript GLYMA05G09310.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G09310.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G008714_T01 (Zea mays), 5'ss of exon 1
CTCTCATGGCACCCACGACTATCACCAGGAAACCCTCAACAATCTCAAGACTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttcttctattcatgtagccaatgattttgatgataataagcatggtattggtctacatttcttgtctttttctgat-ctgttgtttccatataact-----
||| || ||||||||||| || |||||||| || ||| |||| |||      |||||||||||||| ||||| ||||| ||||||||||| ||||| |||||       ||| |   | |   |  | | | |     |  || || | ||  |||  |||   |     |||  |||| | | |||| | |   |    |     
CTCCCACGGCACCCACGAGTACCACCAGGAGACGCTCGACAACCTCCGCCAGGCCATGCACAACACCGGCATCCTCTGCGCCGTCATGCTCGACACCAAGgtcctcctctctttctctctcttctctcactctc----tcctaggccttgtggtgggttacgaatgcg--cttgctctgctgccgttgctcctgcacctttggctg

upper sequence: GLYMA05G09310.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G150098_T01 (Zea mays), 5'ss of exon 1
CTCTCATGGCACCCACGACTATCACCAGGAAACCCTCAACAATCTCAAGACTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttcttctattcatgtagccaatgattttgatgataataagcatggtattggtctacatttcttgtctttttctgatctgttgtttccatata-act
||| || ||||||||| | || |||||||| || ||| |||  |||      |||||||||||||| ||||| ||||| ||||||||||| ||||| |||||   |||  |   |    |      || |        |      ||||| ||| |    | || | ||  ||      || |||   ||   ||    ||
CTCCCACGGCACCCACCAGTACCACCAGGAGACGCTCGACAGCCTCCGCCAGGCCATGCACAACACCGGCATCCTCTGCGCCGTCATGCTCGACACCAAGgtctcttccccaccttccctgctgcgtgctgccttctgtctgtgtcatgg-atttgctgccgttgcatgctttagctgcatgtgtgagttggctacccgct

upper sequence: GLYMA05G09310.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0071g01060.t01 (Vitis vinifera), 5'ss of exon 1
CTCTCATGGCACCCACGACTATCACCAGGAAACCCTCAACAATCTCAAGACTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttcttctattcatgtagccaatgattttgatgat--aataagcatggtattggtctacatttcttgtctttttctgatctgttgtttccatataact
||| || || || || || ||||| ||||| ||  | || ||||||| ||  || ||||| || |||   || ||||||||||||||||| |||||||||||    | ||  | || | |   |  |    || ||  |  |||    ||    ||  |     | |  | ||| |||  |||   | |  |  |   ||||
CTCCCACGGGACTCATGAGTATCATCAGGAGACTTTGAATAATCTCAGGATCGCTATGCAAAATACTCAGATCCTCTGTGCCGTCATGCTCGACACTAAGgtccactatttaactctt-tgctctcttcgcttaatctttgaatttttatttctttatttattttgtgatatctgttttagatgaatcggattta-ggaact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347805|gb|BI973400.1|BI973400
EST:     CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttctt ... ctttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|213598758|gb|DB968229.1|DB968229
EST:     CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttctt ... ctttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|18040542|gb|BM308836.1|BM308836
EST:     CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttctt ... ctttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|151413204|gb|EV283012.1|EV283012
EST:     CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttctt ... ctttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|208167070|gb|GD958660.1|GD958660
EST:     CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGGAAGATGGAAAACCTATTCAACTT
genomic: CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttctt ... ctttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|7685861|gb|AW756509.1|AW756509
EST:     GCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: GCCGTCATGCTTGACACTAAGgtaggttctt ... ctttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|7232491|gb|AW567846.1|AW567846
EST:     GCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: GCCGTCATGCTTGACACTAAGgtaggttctt ... ctttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|192299284|gb|FG992492.1|FG992492
EST:     CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttctt ... ctttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|209712828|gb|BW684183.1|BW684183
EST:     CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttctt ... ctttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|254326089|gb|GR840681.1|GR840681
EST:     CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCCATGCACAACACTGGCATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttctt ... ctttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT