1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTTCTCTTCCTTTCTCGCTTCTCAGATCCAACTCCTCAGATAACACAAGACCAAACCCGCTTTTTCTGCATTTCTAGACTAGACGTTCTACCGGAGAAGgttctcgattcttttctcttttaactttatttttaaaataataataatgagagctggatgcgtctgttcgttgtgaatttcgaggcaatggggttctcat...
species | Glycine max |
transcript | GLYMA05G08060.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCAAACCCGCTTTTTCTGCATTTCTAGACTAGACGTTCTACCGGAGAAG CGACCTTAGAAATTCATTATGGTGGCAACAGCTGCTACTTCATCATTTTTCEST: gi|213611773|gb|DB964777.1|DB964777
genomic: ACCAAACCCGCTTTTTCTGCATTTCTAGACTAGACGTTCTACCGGAGAAGgttctcgatt ... ttgcatgcagCGACCTTAGAAATTCATTATGGTGGCAACAGCTGCTACTTCATCATTTTTC
EST: ACCAAACCCGCTTTTTCTGCATTTCTAGACTAGACGTTCTACCGGAGAAG CGACCTTAGAAATTCATTATGGTGGCAACAGCTGCTACTTCATCATTTTTCEST: gi|209727342|gb|BW651596.1|BW651596
genomic: ACCAAACCCGCTTTTTCTGCATTTCTAGACTAGACGTTCTACCGGAGAAGgttctcgatt ... ttgcatgcagCGACCTTAGAAATTCATTATGGTGGCAACAGCTGCTACTTCATCATTTTTC
EST: ACCAAACCCGCTTTTTCTGCATTTCTAGACTAGACGTTCTACCGGAGAAG CGACCTTAGAAATTCATTATGGTGGCAACAGCTGCTACTTCATCATTTTTC
genomic: ACCAAACCCGCTTTTTCTGCATTTCTAGACTAGACGTTCTACCGGAGAAGgttctcgatt ... ttgcatgcagCGACCTTAGAAATTCATTATGGTGGCAACAGCTGCTACTTCATCATTTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCTCTTCCTTTCTCGCTTCTCAGATCCAACTCCTCAGATAACACAAGACCAAACCCGCTTTTTCTGCATTTCTAGACTAGACGTTCTACCGGAGAAGgttctcgattcttttctcttttaactttatttttaaaataataataatgagagctggatgcgtctgttcgttgtgaatttcgaggcaatggggttctcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA