1 5' 3' | 2 5' 3' | 3 5' 3' |
TATTGATCTAGGGTTAAGCAAGGGGTGGCGTCTATAAAACTTAGAGCAACACTTTATCAAAACCCTAGTTTTTCGCTACTGCGACTGCGCTTCACGATGGgtatttcctctccacatcccttcattactttcttttatattggttttctgatcaatgtgttgcttcgatcttttgttcgtagtattcacggtcaagttgt...
species | Glycine max |
transcript | GLYMA05G04870.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGTTTTTCGCTACTGCGACTGCGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|151396959|gb|EV266832.1|EV266832
genomic: AGTTTTTCGCTACTGCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: CGCTACTGCGACTGTGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|58023239|gb|CX709980.1|CX709980
genomic: CGCTACTGCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: GCGACTGCGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|298181275|gb|HO022714.1|HO022714
genomic: GCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: CTAGTTTTTCGCTACTGCGACTGCGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|254347217|gb|GR856887.1|GR856887
genomic: CTAGTTTTTCGCTACTGCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: GACTGCGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|192332651|gb|FK025308.1|FK025308
genomic: GACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: TTTTTCGCTACTGCGACTGCGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|209711012|gb|BW676409.1|BW676409
genomic: TTTTTCGCTACTGCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: AGTTTTTCGCTACTGCGACTGCGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|298163888|gb|HO013533.1|HO013533
genomic: AGTTTTTCGCTACTGCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: ACTTTATCAAAACCCTAGTTTTTCGCTACTGCGACTGCGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|298173489|gb|HO016825.1|HO016825
genomic: ACTTTATCAAAACCCTAGTTTTTCGCTACTGCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: ACTGCGACTGCGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|298190442|gb|HO032563.1|HO032563
genomic: ACTGCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: ACTGCGACTGCGCTCCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|11274487|gb|BF324840.1|BF324840
genomic: ACTGCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: CTGCGACTGCGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|254327465|gb|GR837088.1|GR837088
genomic: CTGCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: CGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTAEST: gi|192323314|gb|FK017420.1|FK017420
genomic: CGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
EST: CGCTATTGCGACTGCGCTTCACGATGG GTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
genomic: CGCTACTGCGACTGCGCTTCACGATGGgtatttcctc ... gttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTGATCTAGGGTTAAGCAAGGGGTGGCGTCTATAAAACTTAGAGCAACACTTTATCAAAACCCTAGTTTTTCGCTACTGCGACTGCGCTTCACGATGGgtatttcctctccacatcccttcattactttcttttatattggttttctgatcaatgtgttgcttcgatcttttgttcgtagtattcacggtcaagttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctctcc