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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTATCGTCTCGGCTGTCGCAGGTTCAGCACCTTCTTCAACAGGCCGAACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGgttaggtcccttatgtctcttcttatcatttttcaaataattattttgttttggtttggtttcag

Basic information

species Glycine max
transcript GLYMA05G03930.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213619886|gb|DB971145.1|DB971145
EST:     ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAG                         ATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
genomic: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGgttaggtccc ... ttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
EST: gi|51336716|gb|CO980582.1|CO980582
EST:     ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAG                         ATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
genomic: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGgttaggtccc ... ttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
EST: gi|20811949|gb|BQ296427.1|BQ296427
EST:     ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAG                         ATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
genomic: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGgttaggtccc ... ttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
EST: gi|9901632|gb|BE610600.1|BE610600
EST:     ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAG                         ATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
genomic: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGgttaggtccc ... ttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG