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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGACCTCAACAGGTTCGGCAAAGTCGTTAAGCTTCGCTCCTTCAACCCTTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaacaaacactctcatactgttattctctgcgcgttttttaggttctattgaagctgtatgttatagggattcaattcgtaccaagtttattag...

Basic information

species Glycine max
transcript GLYMA05G03150.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197837|gb|HO039376.1|HO039376
EST:     TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACACCGTCTCCGAAG                         GCATATTAACCGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
EST: gi|298197821|gb|HO039360.1|HO039360
EST:     TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAG                         GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
EST: gi|298169591|gb|HO020951.1|HO020951
EST:     TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAG                         GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
EST: gi|254320642|gb|GR827091.1|GR827091
EST:     TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAG                         GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
EST: gi|254314031|gb|GR831660.1|GR831660
EST:     TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAG                         GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
EST: gi|209710464|gb|BW662000.1|BW662000
EST:     TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAG                         GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
EST: gi|209719024|gb|BW674838.1|BW674838
EST:     TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAG                         GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
EST: gi|298193904|gb|HO040552.1|HO040552
EST:     TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAG                         GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
EST: gi|254322077|gb|GR837491.1|GR837491
EST:     TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAG                         GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
EST: gi|16349266|gb|BI974861.1|BI974861
EST:     TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAG                         GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
EST: gi|213620394|gb|DB957291.1|DB957291
EST:     TTTCACTTCCGCTCTCGATGCTCACAAACAGTGCAACGCCGTCTCCGAAG                         GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAGgtaaccaaac ... gaatgttcagGCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAG