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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATGATGGGGAGCTTAAAATATGCGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGgtgagtagcattatagtacttttttagttttcattgaagttatctctagatgtatctggcttgtgatttttcaatcatattggtagagaaatgtatatgtcacaactcattattgttgtattggtttgtgcag

Basic information

species Glycine max
transcript GLYMA05G03110.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048034|gb|CA784645.1|CA784645
EST:     GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAG                         AGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
genomic: GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGgtgagtagca ... gtttgtgcagAGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
EST: gi|9820225|gb|BE555735.1|BE555735
EST:     GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAG                         AGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
genomic: GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGgtgagtagca ... gtttgtgcagAGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
EST: gi|254316795|gb|GR828332.1|GR828332
EST:     GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAG                         AGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
genomic: GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGgtgagtagca ... gtttgtgcagAGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
EST: gi|11274456|gb|BF324809.1|BF324809
EST:     GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAG                         AGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
genomic: GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGgtgagtagca ... gtttgtgcagAGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
EST: gi|208124557|gb|GD925095.1|GD925095
EST:     GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAG                         AGCACCTGAACTTTTGTCTGGGTG
genomic: GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGgtgagtagca ... gtttgtgcagAGCACCTGAACTTTTG-CTGGGTG
EST: gi|261497065|gb|GT185240.1|GT185240
EST:     GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAG                         AGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
genomic: GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGgtgagtagca ... gtttgtgcagAGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
EST: gi|298184961|gb|HO030174.1|HO030174
EST:     CTCCTGTTGTGGTTACACTATGGTACAG                         AGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
genomic: CTCCTGTTGTGGTTACACTATGGTACAGgtgagtagca ... gtttgtgcagAGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT
EST: gi|192310694|gb|FK001118.1|FK001118
EST:     GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAG                         AGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAACTGACAT
genomic: GGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGgtgagtagca ... gtttgtgcagAGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACTGCAATTGACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCATGATGGGGAGCTTAAAATATGCGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGgtgagtagcattatagtacttttttagttttcattgaagttatctctagatgtatctggcttgtgatttttcaatcatattggtagagaaatgtatatgtcacaactcattattgttgtattggtttgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC