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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCGTAAAATTTTTCTTGCTTCTCCTGTCTTGGCTCGAGATCCGGGCCAAGCACAGAAGAATCCGTTTCTGATTTGCATTTTGTACTCACTGgttcgtattcttcactttttctcttttgcgttttctattttcattttttcatttgatttggcgatgtgatttattagcatgctgttatattttgtgttga...

Basic information

species Glycine max
transcript GLYMA05G02910.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02910.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G63190.1 (Arabidopsis thaliana), 5'ss of exon 1
GATTCGTAAAATTTTTCTTGCTTCTCCTGTCTTGGCTCGAGATCCGGGCCAAGCACAGAAGAA------TCCGTTTC-TGATTTGCATTTTG-------TACTCACTGgttcgtattcttcactttttctcttttgcgttttctattttcattttttca---tttgatttggcgatgtgatttattagcatgctgttatattttgtgttga
      |   |||   |||   | | |||||||||||||||||||| ||||||||   |||||      |  |||||  |||||| | ||||          |||| |||  |     ||   ||||  | | |   ||| | ||  | | | |||      |||  |||    |   || || || |  || | | |  | |   ||   
------TCCGATT--CCTTATCTTTTCTGTCTTGGCTCGAGATCCGAGCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAATTTGATTCCTGCGATCACAGgtatgacaggttagattttgttttgtatagttgtatacatacttctttgtgatgttttgtttacttaatcgaatttttggagtgttttaaggtctctcgt---

upper sequence: GLYMA05G02910.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G63190.2 (Arabidopsis thaliana), 5'ss of exon 1
GATTCGTAAAATTTTTCTTGCTTCTCCTGTCTTGGCTCGAGATCCGGGCCAAGCACAGAAGAA------TCCGTTTC-TGATTTGCATTTTG-------TACTCACTGgttcgtattcttcactttttctcttttgcgttttctattttcattttttca---tttgatttggcgatgtgatttattagcatgctgttatattttgtgttga------
                 ||   | | |||||||||||||||||||| ||||||||   |||||      |  |||||  |||||| | ||||          |||| |||  |     ||   ||||  | | |   ||| | ||  | | | |||      |||  |||    |   || || || |  || | | |  | |   ||| |      
-----------------TTATCTTTTCTGTCTTGGCTCGAGATCCGAGCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAATTTGATTCCTGCGATCACAGGTATGACAGgttagattttgttttgtatagttgtatacatacttctttgtgatgttttgtttacttaatcgaatttttggagtgttttaaggtctctcgtttagaaatc

upper sequence: GLYMA05G02910.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g09870.t01 (Vitis vinifera), 5'ss of exon 1
GATTCGTAAAATTTTTCTTGCTTCTCCTGTCTTGGCTCGAGATCCGGGCCAAGCACAGAAGAATCCGTTTCTGATTT----GCATTTTGTACTCACTGgttcgtattcttc--actttttctcttttgcgttttctattttcattttttcatttgatttg-gcgatgtg-atttattagcatgctgttatattttgtgttga---
        | ||     |||||||||||||||||||||||||||||||||||||||||||||||| | ||  | |||    ||   |      ||||   | |   | |||  ||| ||||| ||| |  |||| | ||||    ||||  | |   ||| ||| |||    ||  |   |     |       ||    ||   
-----TGGAGATCCGGTTTGCTTCTCCTGTCTTGGCTCGAGATCCGGGCCAAGCACAGAAGAATCGGATTAGGGTTTCGGTGCCGCTCACTTCCACTTCATTGAGgtgttctaactctttctatttggatttttttttttttgggtttttgtctctcttgtgcgctgtttggttgctgagaaaagatagggaaatggaaggagtt