Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTCACACTGATGCAATGTCTGGTATGTTCCATAAGGGGGTCCGCTGTGATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactttgttttgcttggatttatggtgaaattgttttcagggaaataattttttgtcctttgtgcag

Basic information

species Glycine max
transcript GLYMA05G02630.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02630.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g09280.t01 (Vitis vinifera), 5'ss of exon 3
ATAGTCACACTGATGCAATGTCTGGTATGTTCCATAAGGGGGTCCGCTGTGATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactttgttttgcttggat----ttatggtgaaattgttttcagggaaataattttttgtcct----ttgtgcag-------------------------------------
  ||  |||  ||||| |||  |||||  |||||||| ||  | |  |||||||| ||||| ||  ||||||||||||||||||| ||||| || |||||||||| | ||| |||    |  ||    ||||  | |||||  ||||| |  |||  | || | |  |    || |                                         
GGAGCTACAAAGATGCTATGGGTGGTACCTTCCATAAAGGTATTCAATGTGATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatttatttcatgttaatgctcttatt-taaaatttatttcatgttaatgctcttatttaataagattttctgataaacttattgttaaacctttgttctgaattctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207806102|gb|GD777879.1|GD777879
EST:     GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAAT                         AAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
genomic: GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactt ... ctttgtgcagAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
EST: gi|254314600|gb|GR829593.1|GR829593
EST:     GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGT                         AAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
genomic: GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactt ... ctttgtgcagAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
EST: gi|193525464|gb|FK479233.1|FK479233
EST:     GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGT                         AAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
genomic: GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactt ... ctttgtgcagAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
EST: gi|208030960|gb|GD832162.1|GD832162
EST:     GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAAT                         AAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
genomic: GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactt ... ctttgtgcagAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
EST: gi|207717301|gb|GD697278.1|GD697278
EST:     GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGT                         AAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
genomic: GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactt ... ctttgtgcagAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
EST: gi|19348004|gb|BM892536.1|BM892536
EST:     GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGT                         AAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
genomic: GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactt ... ctttgtgcagAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
EST: gi|8403697|gb|BE059393.1|BE059393
EST:     GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGT                         AAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
genomic: GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactt ... ctttgtgcagAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
EST: gi|26048854|gb|CA785307.1|CA785307
EST:     GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGT                         AAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
genomic: GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactt ... ctttgtgcagAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
EST: gi|23727280|gb|BU761667.1|BU761667
EST:     GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGT                         AAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG
genomic: GATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactt ... ctttgtgcagAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGG