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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAGCGTGTGACAAGGGCTGTTGGATCTGGTCTGCTATTACTCAGAGAGCTTACCAGACTGCTGAGATTATTGCTTCTGTTAATGGAGTTACCCGTAGgtttgtttgtttgtttgttttgtttttttccctatttaatttgccaccatatataattgctatgcaccccaatttccaaaacctgaccatacttgtaaatttctttcatttcag

Basic information

species Glycine max
transcript GLYMA05G02120.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02120.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g08200.t01 (Vitis vinifera), 5'ss of exon 2
TGGGAGCGTGTGACAAGGGCTGTTGGATCTGGTCTGCTATTACTCAGAGAGCTTACCAGACTGCTGAGATTATTGCTTCTGTTAATGGAGTTACCCGTAGgtttgtttgtttgtttgttttgtttttttccctatttaatttgccaccatatataattgctatgcaccccaatttccaaaacctgaccatacttgtaaatttctttcatttcag
||   || |||||   | |||| ||||| ||| || ||||||| ||||||||||||||| | || ||||| |||||||| || || || || ||||| |||| |||   | |        | ||   ||    |   ||    | |   | | |  |   ||||       || |  |||   ||  | ||  |   | ||  |||   |    
TGAAGGCTTGTGAAGGGAGCTGCTGGATATGGCCTTCTATTACCCAGAGAGCTTACCAGGCCGCAGAGATCATTGCTTCCGTAAACGGGGTCACCCGGAGgtgtgtgaatcta-------tattgaattgaacaaaaaaaagacgagggt-tttggtgcttatgtgtttggatatg-aaactatggacgtagat---agttcatttgggtgt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322119|gb|FK012223.1|FK012223
EST:     GCTTACCAGACTGCTGAGATTATTGCTTCTGTTAATGGAGTTACCCGTAG                         TTATATAGTCCCAGAATACAGCTTTCTGGATGCCCGTGGA
genomic: GCTTACCAGACTGCTGAGATTATTGCTTCTGTTAATGGAGTTACCCGTAGgtttgtttgt ... ttcatttcagTTATATAGTCCCAGAATACAGCTTTCTGGATGCCCGTGGA