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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTGATCCTACGGCATGTTCATGTTTTTGGTTAGCAGAGTAACTAAGGATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGgtatctcttgtttttgtttgtctcctaaaattgattcactgaggattttaatttattcaattttcgtaatgctgatcctcctttaattagtggaatttaa...

Basic information

species Glycine max
transcript GLYMA05G01300.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259715|gb|BG882623.1|BG882623
EST:     GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCT--                         -AGGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATC
genomic: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGgtatctcttg ... caatatatagCAGGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATC
EST: gi|19053090|gb|BM731757.1|BM731757
EST:     GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAG                         CAGGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATC
genomic: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGgtatctcttg ... caatatatagCAGGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATC
EST: gi|27426562|gb|CA938082.1|CA938082
EST:     GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAG                         CAGGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATC
genomic: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGgtatctcttg ... caatatatagCAGGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATC
EST: gi|192329935|gb|FK021521.1|FK021521
EST:     GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCT--                         -AGGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATC
genomic: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGgtatctcttg ... caatatatagCAGGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATC
EST: gi|22931742|gb|BU548881.1|BU548881
EST:     GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCT--                         -AGGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATC
genomic: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGgtatctcttg ... caatatatagCAGGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATC