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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACAAACATGAAGACTCGTACCTCGACCAAAATCTCTGCAACGTGGATTCCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctctctcctctatatcttaacttcttcaactattgtgtttttttttttttgagctgtgaagttggaaacttgggtttatgggttttgattttgagagaatttaaaacattgtggtccgatcctgggaattttcttttgggtgcag

Basic information

species Glycine max
transcript GLYMA04G43340.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054062|gb|BM732729.1|BM732729
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|213619802|gb|DB967424.1|DB967424
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|213615386|gb|DB965651.1|DB965651
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|151395197|gb|EV265068.1|EV265068
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|31561426|gb|CD487264.1|CD487264
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|209720190|gb|BW674528.1|BW674528
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|16104724|gb|BI892464.1|BI892464
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAGCGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|17023237|gb|BM094271.1|BM094271
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|8283506|gb|BE021065.1|BE021065
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|192305500|gb|FG994294.1|FG994294
EST:     CAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG