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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCCTTTTCCGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatcaaattctgtttcggattatgcacttttatagatagatgacatgcataattctattttatcactctaaaaactgaatacattcttttgcatttcag

Basic information

species Glycine max
transcript GLYMA04G42830.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 4
GCCTCCTTTTCCGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatcaaattctgtttcggattatgcacttttatagatagatgacatgcataattctattttatcactctaaaaactg-aatacattcttttgcatttcag
||||  | ||| | |||||  ||||||| || || || |||||||||||||||||||| ||||| |||||||| ||||||||| | ||||||||||| |||||   ||  |||   |||| |       || |   |  |  |   |   ||    |      ||  ||     |   || || | ||     ||| ||       
GCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGGGACATGAAGCCCCAGACCTTCGCCAGCCTCGTCTCCGCTCTCCTCTACGAGAAGAGgtaatgaactaaaggatgttgctagcgcagcgcgagttgaattgagtagtatatgaagcagagttaaattcaaatgccaattggagtattcaatttcgcg------

upper sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G092975_T01 (Zea mays), 5'ss of exon 3
GCCTCCTTTTCCGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgta-------tccaatcaaattctgtttcggattatgcacttttatagatagatgacatgcataattctattttatcactctaaaaactg--aatacattcttttgcatttcag
|  |  | ||| | |||||  |||||||||| || || |||||||||||||||||| | |||||||||||||| ||||| ||  | ||||||||||| ||||        | | |||  | | |   | | ||| || |   |  | ||||||     ||  || ||   |||||    | ||    |||  |   |||               
GGTTGGTGTTCAGGCACAAGCTGTATCAGCTGCGGGAGGAGAGGGACATGAAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattttgctatcgtacttttggtggaattgtgtaggatactggatagaccttctgggtagtt--gttttaattttttatgccctgccagagcatgga------------

upper sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 3
GCCTCCTTTTCCGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatcaaattctgtttcggattatgcacttttatagatagatgacatgcataattctatt--ttatcactctaaaaactgaatacattcttttgcatttcag
|  |  | ||| | |||||  |||||||||| ||||| |||||||||||||||||  | |||||||||||||| ||||| ||  | ||||||||||| ||||    | |    |  ||           | | | |    |||    |  |  | || | |   |  || | | | ||||   ||||| |  |      |       
GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaacctactgcgggtagttgttattttaaattttgaatgcgctgccagac-------

upper sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 3
GCCTCCTTTTCCGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatcaaattctgtttcggattatgcacttttatagatagatgacatgcataattctattttatcactctaaaaactgaatacattcttttgcatttcag
| ||  | ||| | ||||| ||||| |||||    || |||||||||||||||||| |||||||||||||||| || || ||  | ||||| ||||||||||  | || | |   |  |||  ||  |    | ||| |||  |      ||   | |||    ||  |     |  |     |  ||||||   |||       
GGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaaccca---caatttttgac-agattcatttgtaggcatggtgtatctgtgatttc-cttggtgtgcatggaggtaaatcacattcacatgccgaatga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16343834|gb|BI969429.1|BI969429
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|16996875|gb|BM086247.1|BM086247
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|298166167|gb|HO009138.1|HO009138
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|298176811|gb|HO023284.1|HO023284
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGCAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|16348632|gb|BI974227.1|BI974227
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|8401459|gb|BE057093.1|BE057093
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|192322314|gb|FK014555.1|FK014555
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|192325513|gb|FK018424.1|FK018424
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|151409085|gb|EV278893.1|EV278893
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|7588098|gb|AW703901.1|AW703901
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|8283379|gb|BE020940.1|BE020940
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|298178421|gb|HO024156.1|HO024156
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|298189628|gb|HO038031.1|HO038031
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|213605503|gb|DB968761.1|DB968761
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|6567370|gb|AW234981.1|AW234981
EST:     CCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: CCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|151397166|gb|EV267039.1|EV267039
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|151411912|gb|EV281723.1|EV281723
EST:     AAGCCCCAAACCTTTGCCGGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
EST: gi|16343936|gb|BI969531.1|BI969531
EST:     AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAG                         GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA
genomic: AAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatc ... tgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGA