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AGGTGGATAGGGTGATACAGATTACAGAGTTTGTGTATCCATCTTCGTTCGTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacgcccttctctttcccatttcttcttccttccactgttctctccactttatgttttctattcgttattttcggtttctgaaccctagcgttt...
species | Glycine max |
transcript | GLYMA04G41600.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAG AGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAGEST: gi|207806267|gb|GD778744.1|GD778744
genomic: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacg ... tattttacagAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAG
EST: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAG AGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAGEST: gi|207737556|gb|GD716020.1|GD716020
genomic: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacg ... tattttacagAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAG
EST: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAG AGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAGEST: gi|22525271|gb|BU084082.1|BU084082
genomic: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacg ... tattttacagAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAG
EST: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAG AGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAGEST: gi|254325922|gb|GR838803.1|GR838803
genomic: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacg ... tattttacagAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAG
EST: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAG AGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAGEST: gi|254327481|gb|GR837104.1|GR837104
genomic: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacg ... tattttacagAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAG
EST: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAG AGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAGEST: gi|192295186|gb|FG986905.1|FG986905
genomic: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacg ... tattttacagAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAG
EST: GTCGCTCGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAG AGACTGGAGCCTGTGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAGEST: gi|208189977|gb|GD993565.1|GD993565
genomic: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacg ... tattttacagAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAG
EST: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAG AGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAGEST: gi|298177837|gb|HO027390.1|HO027390
genomic: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacg ... tattttacagAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAG
EST: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCGTCAG AGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAG
genomic: GTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacg ... tattttacagAGACTGGAGCCTGCGAAGAAAAGAATAATTTATGGAGGACGGCGCAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGGATAGGGTGATACAGATTACAGAGTTTGTGTATCCATCTTCGTTCGTCGCTTGGCTTGTTCGCCTTCACTCTCCGACATTCACATCATTCATCAGgcaagcaacgcccttctctttcccatttcttcttccttccactgttctctccactttatgttttctattcgttattttcggtttctgaaccctagcgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctctcc