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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcactcgctctacaaaatatatctgctaaatcacccttcatagattctgatgtcattcaacacttgtttctattctttttctcattttagtttc...

Basic information

species Glycine max
transcript GLYMA04G41130.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410220|gb|EV280035.1|EV280035
EST:     ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAA                         ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
genomic: ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: gi|151395221|gb|EV265092.1|EV265092
EST:     ACAGAATCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAA                         ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
genomic: ACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: gi|298176588|gb|HO023175.1|HO023175
EST:     AAAACTGAACGCTATAGAAAATGTTCAAAAA                         ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
genomic: AAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: gi|298176132|gb|HO015537.1|HO015537
EST:     ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAA                         ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
genomic: ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: gi|298173235|gb|HO020219.1|HO020219
EST:     ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAA                         ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
genomic: ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: gi|151413172|gb|EV282980.1|EV282980
EST:     AAAACTGAACGCTATAGAAAATGTTCAAAAA                         ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
genomic: AAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: gi|7795432|gb|AW780757.1|AW780757
EST:     AAAACTGAACGCTATAGAAAATGTTCAAAAA                         ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
genomic: AAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA