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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGATCATACAGATCCACAGGAAAAAATTCACTCCAACAGAATATCACAAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttctgagtttctcttgctaaattaaattgccatggcaccttgaatacattatagaatcttaaaagctcttcctttttttaacttctcatggagttattag

Basic information

species Glycine max
transcript GLYMA04G41080.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708314|gb|BW683904.1|BW683904
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|10845219|gb|BF068380.1|BF068380
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|15287380|gb|BI471271.1|BI471271
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|17963446|gb|BM270195.1|BM270195
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|31561026|gb|CD486864.1|CD486864
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|8669249|gb|BE190356.1|BE190356
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|10233023|gb|BE801911.1|BE801911
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|192321025|gb|FK013513.1|FK013513
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|17964473|gb|BM271208.1|BM271208
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|13480651|gb|BG509994.1|BG509994
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|17963465|gb|BM270214.1|BM270214
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|15589894|gb|BI674510.1|BI674510
EST:     AAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
EST: gi|8669257|gb|BE190364.1|BE190364
EST:     AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAG                         CTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG
genomic: AAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttc ... gagttattagCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGCTGGAAAAAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAGATCATACAGATCCACAGGAAAAAATTCACTCCAACAGAATATCACAAGAGGCTTAACAATCCAAAATGCAGCCACAAAACCAGCTAAGTCACCAGgtacttgttctgagtttctcttgctaaattaaattgccatggcaccttgaatacattatagaatcttaaaagctcttcctttttttaacttctcatggagttattag

- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG