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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCACGGAGAGAGAGAGAGAGGTTTTGACGCAACACACTTTCACTGAGAAAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttgtcgtcaccaaccacaccaagaatctctttttatcgattcataagaatcacgtttttttgttaattcacttttgggggggtttggtggctg...

Basic information

species Glycine max
transcript GLYMA04G41010.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328360|gb|FK020071.1|FK020071
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTC---T--G                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|8402825|gb|BE058459.1|BE058459
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|7590130|gb|AW705890.1|AW705890
EST:     CAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: CAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|6747130|gb|AW317586.1|AW317586
EST:     TCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: TCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|38193002|gb|CF922208.1|CF922208
EST:     CAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: CAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|209716781|gb|BW665459.1|BW665459
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|151410956|gb|EV280771.1|EV280771
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|254327788|gb|GR834753.1|GR834753
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|208083785|gb|GD881733.1|GD881733
EST:     ACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: ACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|151395715|gb|EV265592.1|EV265592
EST:     ACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: ACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|151405035|gb|EV274849.1|EV274849
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTC---T--G                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298166517|gb|HO009956.1|HO009956
EST:     AAGGATCTCTATCTACCAAGGAGCAGAGTAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298190009|gb|HO032130.1|HO032130
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|8286466|gb|BE024034.1|BE024034
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298192631|gb|HO033065.1|HO033065
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298184892|gb|HO030105.1|HO030105
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298198946|gb|HO042309.1|HO042309
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298187493|gb|HO034642.1|HO034642
EST:     AAGGATCTCAATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|213618064|gb|DB963697.1|DB963697
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298163861|gb|HO012594.1|HO012594
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298191726|gb|HO035808.1|HO035808
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|192298149|gb|FG991669.1|FG991669
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298198862|gb|HO042225.1|HO042225
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|254340061|gb|GR858186.1|GR858186
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|254340980|gb|GR854708.1|GR854708
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|209697793|gb|BW663937.1|BW663937
EST:     CAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: CAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|17020763|gb|BM091797.1|BM091797
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|207816569|gb|GD787438.1|GD787438
EST:     ACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: ACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|151412043|gb|EV281855.1|EV281855
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTC---T--G                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|254340060|gb|GR858185.1|GR858185
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|193316038|gb|FK280760.1|FK280760
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTT
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTT
EST: gi|254330905|gb|GR842170.1|GR842170
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|209697792|gb|BW663936.1|BW663936
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298180412|gb|HO021965.1|HO021965
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298170396|gb|HO019020.1|HO019020
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|298165228|gb|HO011277.1|HO011277
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
EST: gi|151400325|gb|EV270139.1|EV270139
EST:     AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAG                         TGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG
genomic: AAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttg ... ttcatggcagTGAATAAGAGAATGGCTTCAGATCGGAAACTTCACACTTTCGAGGAGGTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCACGGAGAGAGAGAGAGAGGTTTTGACGCAACACACTTTCACTGAGAAAGGATCTCTATCTACCAAGGAGCAGAATAAAACCCTTCTCTCTGGTAAGgtaagtgttgtcgtcaccaaccacaccaagaatctctttttatcgattcataagaatcacgtttttttgttaattcacttttgggggggtttggtggctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG