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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAATTACTACCTGCGACAGAAGATCAACGGTAATGGTCGCGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtatttttttttctttctcttcgtccttttacaatcatataatctctagttcgaggtagctatgttatttcaattggtagttattttcttggaatttgtg...

Basic information

species Glycine max
transcript GLYMA04G40450.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213594179|gb|DB963776.1|DB963776
EST:     GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG                         GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
EST: gi|207688310|gb|GD670717.1|GD670717
EST:     GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG                         GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGG
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGG
EST: gi|207694788|gb|GD677963.1|GD677963
EST:     GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG                         GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
EST: gi|207689359|gb|GD670870.1|GD670870
EST:     GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG                         GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGG
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGG
EST: gi|213611720|gb|DB960648.1|DB960648
EST:     GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG                         GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTC-AC
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
EST: gi|14990103|gb|BI315776.1|BI315776
EST:     GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG                         GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
EST: gi|192310103|gb|FK001885.1|FK001885
EST:     GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG                         GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC