Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAAAATGAGGTTCGTTTATGCCCATTTTCCCATCAACGCAAGCATCGGCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttactctcttcatctctatttcttttaattaatttatttattttcttaatcttttgctactaggaaataaattgtggtattaggtttagtgattgatttgcttattacgtgtatcattag

Basic information

species Glycine max
transcript GLYMA04G40430.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602182|gb|BQ612513.1|BQ612513
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298182885|gb|HO031620.1|HO031620
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|193383123|gb|FK348182.1|FK348182
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAA-GAAG                         GTGAGAAA-GTGGACCTTACTTAACGGTGTTTCCGTTGTTC
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTT-CTTAACGGTGTTTCCGTTGTTC
EST: gi|31305784|gb|CD390987.1|CD390987
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|15200737|gb|BI424504.1|BI424504
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298165484|gb|HO011533.1|HO011533
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|19269622|gb|BM885878.1|BM885878
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298168318|gb|HO014493.1|HO014493
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|193421860|gb|FK386281.1|FK386281
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAA-GAAG                         GTGAGAAA-GTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|18038957|gb|BM307251.1|BM307251
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|9898563|gb|BE607531.1|BE607531
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|24136101|gb|BU926611.1|BU926611
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298169475|gb|HO020835.1|HO020835
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|17022844|gb|BM093878.1|BM093878
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|193337473|gb|FK304169.1|FK304169
EST:     TTGAGATCAGTAAATTTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: TTGAGATCAG-AAA-TTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|207820314|gb|GD792110.1|GD792110
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|15287545|gb|BI471436.1|BI471436
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|193475028|gb|FK441669.1|FK441669
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTT
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTT
EST: gi|8826982|gb|BE210712.1|BE210712
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATNTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298178032|gb|HO023881.1|HO023881
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298196811|gb|HO041554.1|HO041554
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298171212|gb|HO016244.1|HO016244
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGACGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298190805|gb|HO032926.1|HO032926
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|209721335|gb|BW665801.1|BW665801
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|9440319|gb|BE440826.1|BE440826
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|15337517|gb|BI498173.1|BI498173
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCT-GGCGAAAAGAAG                         -TGAGAAAAGTG-ACCTTCTTAACGG
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGG
EST: gi|4397583|gb|AI496580.1|AI496580
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGNGTNTTCCGTTGT-CGATCTGAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGT-TTCCGTTGTTCGATCTGAAAA
EST: gi|23730795|gb|BU763503.1|BU763503
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|31473816|gb|CD415844.1|CD415844
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTNAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|213587789|gb|DB959613.1|DB959613
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|208221896|gb|GE017702.1|GE017702
EST:     GCAACGACAACAAGTCTGTTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTT
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTT
EST: gi|298199575|gb|HO043452.1|HO043452
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298182497|gb|HO031232.1|HO031232
EST:     GCAACGACAGCAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|207760910|gb|GD734961.1|GD734961
EST:     GCAACGACAACAAGTCTGTTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTT
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTT
EST: gi|298172026|gb|HO021618.1|HO021618
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|193303616|gb|FK269408.1|FK269408
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298163903|gb|HO013548.1|HO013548
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAA
EST: gi|298168666|gb|HO009596.1|HO009596
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|7042147|gb|AW472041.1|AW472041
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTT
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTT
EST: gi|193393495|gb|FK360621.1|FK360621
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGA
EST: gi|14012043|gb|BG726974.1|BG726974
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|208159216|gb|GD952151.1|GD952151
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|8827503|gb|BE211233.1|BE211233
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298180964|gb|HO022403.1|HO022403
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298163111|gb|HO011844.1|HO011844
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|15337546|gb|BI498202.1|BI498202
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|193719350|gb|FK651822.1|FK651822
EST:     AATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: AATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|209727510|gb|BW663746.1|BW663746
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|14991434|gb|BI317107.1|BI317107
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|15286569|gb|BI470460.1|BI470460
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298177258|gb|HO023505.1|HO023505
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCCGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298166890|gb|HO010329.1|HO010329
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|18733868|gb|BM527858.1|BM527858
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|208340346|gb|GE137028.1|GE137028
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298163640|gb|HO012373.1|HO012373
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATCTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298178502|gb|HO024237.1|HO024237
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|9900226|gb|BE609194.1|BE609194
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298173347|gb|HO016683.1|HO016683
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|208208230|gb|GE005547.1|GE005547
EST:     AACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACC-TCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: AACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298186198|gb|HO036831.1|HO036831
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGGAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298167479|gb|HO012742.1|HO012742
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|7924181|gb|AW830207.1|AW830207
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|192304889|gb|FG997071.1|FG997071
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298164385|gb|HO014030.1|HO014030
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGT
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGT
EST: gi|298195600|gb|HO043991.1|HO043991
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACAAAATGAGGTTCGTTTATGCCCATTTTCCCATCAACGCAAGCATCGGCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttactctcttcatctctatttcttttaattaatttatttattttcttaatcttttgctactaggaaataaattgtggtattaggtttagtgattgatttgcttattacgtgtatcattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG