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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGGAATTGATCAATCTGATGCTGATTCCGTGCTATCTTTTGATGATTACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGgtggtaatttggtatcaattatatatgttaattttggtcccccccctacccctttatatgtctctttctgcaccttatgtcatgtgggaatatgtgattgcatagagtggcaacatcaacctgaactcaacgtgtatcagtgatgtgatttggttgctatag

Basic information

species Glycine max
transcript GLYMA04G40170.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195064|gb|HO043592.1|HO043592
EST:     ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAG                         GTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
genomic: ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGgtggtaattt ... gttgctatagGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
EST: gi|6666382|gb|AW277841.1|AW277841
EST:     ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAG                         GTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
genomic: ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGgtggtaattt ... gttgctatagGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
EST: gi|4396797|gb|AI495794.1|AI495794
EST:     ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAG                         GTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
genomic: ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGgtggtaattt ... gttgctatagGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
EST: gi|192330232|gb|FK019827.1|FK019827
EST:     ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAG                         GTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTAC
genomic: ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGgtggtaattt ... gttgctatagGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTAC
EST: gi|7691226|gb|AW759357.1|AW759357
EST:     ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAG                         GTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
genomic: ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGgtggtaattt ... gttgctatagGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
EST: gi|4396869|gb|AI495866.1|AI495866
EST:     ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAG                         GTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
genomic: ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGgtggtaattt ... gttgctatagGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
EST: gi|6666554|gb|AW278005.1|AW278005
EST:     ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAG                         GTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT
genomic: ACAATAAACCACTTATGGATTTCATGTCTGATTTGCCTGAGAACGAACAGgtggtaattt ... gttgctatagGTTATATTGGTGGGGCACAGCGCTGGAGGGTTGAGCATTACTCAGGCCTGT