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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGGAACTATGAGTAGACTGCCAATTAGAAGGTCCTTGGTTGGTTCATTTGAGGAATCTTTGTTATCTGGTCGCCTACTATCTGGGAAAGTTAGTCCGgttggtattattctcatatacaggcttcctactttatgcattagtttcctaatgacctttcagttattttactcttgtaattgttgtggcttctatttgcag

Basic information

species Glycine max
transcript GLYMA04G37640.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37640.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g00570.t01 (Vitis vinifera), 5'ss of exon 2
ATGT-GGAACTATGAGTAGACTGCCAATTAGAAGGTCCTTGGTTGGTTCATTTGAGGAATCTTTGTTATCTGGTCGCCTACTATCTGGGAAAGTTAGTCCGgttggtattattctcatat-acaggcttcctactttatgcattagtttcctaatgacctttcagttattttactcttgtaattgttgtggcttctatttgcag
 |||  ||| | ||||| || |||   ||||||||||||| ||||||||||||||||| ||  |||| ||||| ||  ||  |||||||||||| |||| |||| |||| |   || | | | |          || |||  ||    | ||  |     | ||  | |||        |  || || ||  || ||| |||||
-TGTCAGAATTTTGAGTGGATTGCATGTTAGAAGGTCCTTAGTTGGTTCATTTGAGGAGTCCCTGTTGTCTGGCCGGTTATCATCTGGGAAAGTCAGTCAGgttagtatcaacatcctgtgatataaggtggtattcatgtgtttaacttctgctacttatacacgtttttcttcaacttcttttttatgatttttatatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734024|gb|BM527943.1|BM527943
EST:     TTGAGGAATCTTTGTTATCTGGTCGCCTACTATCTGGGAAAGTTAGTCCG                         AAAATTGAAGGCTTTCTTGCATTGCTGAATGTAACTGGTGGCAATTTCTCA
genomic: TTGAGGAATCTTTGTTATCTGGTCGCCTACTATCTGGGAAAGTTAGTCCGgttggtatta ... ctatttgcagAAAATTGAAGGCTTTCTTGCATTGCTGAATGTAACTGGTGGCAATTTCTCA