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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGAGCCGATGTGGGGTGGAATGTGAAGGACTAGAGACCTTGTGCATTAAGGATCAGACACTTAGTATTGAAAgtatgttctaccagtatgtgcttaaggttttgctgcttaaatatctcctataacatttttgctatattgcag

Basic information

species Glycine max
transcript GLYMA04G37050.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 18
GTTTTGAGCCGATGTGGGGTGGAATGTGAAGGACTAGAGACCTTGTGCATTAAGGATCAGACACTTAGTATTGAAAgtatgttctaccagtatgtg-cttaaggttttgctgcttaaatatctcctataacatttt----tgctatattgcag----------
||| |||  ||  ||||| |||||||||| ||||| ||||  |||||||| ||||| || |||||||  | |||||||||||| ||     ||    || || ||    |   ||  |  || |  || | || |     || | | ||| |           
GTTCTGACTCGGAGTGGGATGGAATGTGATGGACTTGAGAAATTGTGCATCAAGGACCAAACACTTACAAATGAAAgtatgttttattttgatagatctcaatgtcaatccagtttgaattcccaaatgaaatgtaaaaatgatgttttggaaaatattgcag