1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTGCTTTTTCCCATTGCTTCTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatgttcttaaaatttgcaattctttctatctttaatttttctgcatttatatttatcactttgtttattctcctcttggatgtag
species | Glycine max |
transcript | GLYMA04G37030.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|298181405|gb|HO022844.1|HO022844
genomic: GATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|208057543|gb|GD852114.1|GD852114
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|6719165|gb|AW306812.1|AW306812
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: TTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|192325767|gb|FK017989.1|FK017989
genomic: TTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: AATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|193496052|gb|FK458170.1|FK458170
genomic: AATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: GAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|298196386|gb|HO041129.1|HO041129
genomic: GAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|298196464|gb|HO041207.1|HO041207
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCATAATCG GTGTAGGTTACAGGTTTAAGGGTTTGGTTTTCATTTAGGTCACTAATCCGAEST: gi|17400147|gb|BM176929.1|BM176929
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: GATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|9439733|gb|BE440247.1|BE440247
genomic: GATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: GTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|18041174|gb|BM309468.1|BM309468
genomic: GTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: TCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|207755014|gb|GD726963.1|GD726963
genomic: TCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|120533672|gb|EH261805.1|EH261805
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: ATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|208299254|gb|GE100097.1|GE100097
genomic: ATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: TAACGTGAGATCTCAGATTGCAAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|213618293|gb|DB973063.1|DB973063
genomic: TAACGTGAGATCTCAGATTGC-AATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|192333182|gb|FK026511.1|FK026511
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|298198281|gb|HO039820.1|HO039820
genomic: CTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTCCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTACTCCGAEST: gi|18716094|gb|BM522869.1|BM522869
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|192299603|gb|FG987735.1|FG987735
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|17519181|gb|BM188223.1|BM188223
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|193527066|gb|FK485460.1|FK485460
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: GTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|298198546|gb|HO040085.1|HO040085
genomic: GTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|298175351|gb|HO016010.1|HO016010
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GT-TA-----CAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|151411725|gb|EV281536.1|EV281536
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG AEST: gi|151411725|gb|EV281536.1|EV281536
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtag-
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG AEST: gi|151411725|gb|EV281536.1|EV281536
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtag-
EST: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG AEST: gi|6502002|gb|AW203375.1|AW203375
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtag-
EST: CAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GT-TA-----CAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|298167708|gb|HO012971.1|HO012971
genomic: CAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: CTAGCGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GT-TA-----CAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|298172907|gb|HO019891.1|HO019891
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: AGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGAEST: gi|14126592|gb|BG791030.1|BG791030
genomic: AGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: GATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: GATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCTTTTTCCCATTGCTTCTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatgttcttaaaatttgcaattctttctatctttaatttttctgcatttatatttatcactttgtttattctcctcttggatgtag
- - - - - - - - - - - - - GAGATC