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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAGGCAAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagagagagagagagagagaggctctttaccttctcgtgtttcaatttgaatttctgttaaatattattttgttagggttggaaacttgaaatgaacgtgtggtgtggttttag

Basic information

species Glycine max
transcript GLYMA04G36420.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36420.2 (Glycine max), 5'ss of exon 1
lower sequence: AT4G24770.1 (Arabidopsis thaliana), 5'ss of exon 1
GGAAGAGGCAAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagagagagagagagagagaggctctttaccttctcgtgtttcaatttgaatttctgttaaatattattttgttagggttggaaacttgaaatgaacgtgtggtgtggttttag
|||||| || ||||| ||||| || || ||| |||| || ||| |||||||    ||||| |||||||| || |||||||| || ||||||||||||||||| |           |   ||      ||||    | ||| | |     | |  ||   | ||| || || ||   |  |  |||    ||| |  | |   | || |||| |||  |
GGAAGAAGCCAAGCTTTTCGTCGGAAATTTGGCTTATGATGTTAATAGCCAAGCTTTGGCTATGCTCTTTGAGCAAGCCGGTACTGTTGAAATCGCCGAGgtga-----------atttagctgctttcttcttgtgctcatatggtcgtcttgatgcgt-ttatatgttgttcattatgcattg----cttaaggtta-tttatg-tgtgttttgtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403170|gb|BE058804.1|BE058804
EST:     AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAG                         GTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
genomic: AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagaga ... gtggttttagGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
EST: gi|23058133|gb|BU578293.1|BU578293
EST:     AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAG                         GTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
genomic: AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagaga ... gtggttttagGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
EST: gi|17023176|gb|BM094210.1|BM094210
EST:     AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAG                         GTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
genomic: AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagaga ... gtggttttagGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
EST: gi|15204745|gb|BI427513.1|BI427513
EST:     AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAG                         GTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
genomic: AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagaga ... gtggttttagGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
EST: gi|18848478|gb|BM567697.1|BM567697
EST:     AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAG                         GTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
genomic: AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagaga ... gtggttttagGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
EST: gi|15286229|gb|BI470120.1|BI470120
EST:     AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAG                         GTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
genomic: AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagaga ... gtggttttagGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
EST: gi|7590995|gb|AW706737.1|AW706737
EST:     AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAG                         GTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
genomic: AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagaga ... gtggttttagGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
EST: gi|23728471|gb|BU762290.1|BU762290
EST:     AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAG                         GTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
genomic: AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagaga ... gtggttttagGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
EST: gi|298191349|gb|HO038828.1|HO038828
EST:     AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAG                         GTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG
genomic: AGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGgtcagagaga ... gtggttttagGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACG