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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATTTATTTCTCTTTCTCCACTGAGGTGACTCGTCGCGCTTTACAAATTCTCAGTCTGCGACTCTGgtatgtatgcgttgatttcttctgcttagagctcaaatgcctccgacttttattttattgatttacttgtttgttccaattcaccacgttctcatgattt...

Basic information

species Glycine max
transcript GLYMA04G33180.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180788|gb|HO022227.1|HO022227
EST:     TCCACTGAGGTGACTCGTCGCGCTTTACAAATTCTCAGTCTGCGACTCTG                         TGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
genomic: TCCACTGAGGTGACTCGTCGCGCTTTACAAATTCTCAGTCTGCGACTCTGgtatgtatgc ... gcttattcagTGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
EST: gi|192310835|gb|FK000321.1|FK000321
EST:     TCCACTGAGGTGACTCGTCGCGCTTTACAAATTCTCAGTCTGCGACTCTG                         TGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
genomic: TCCACTGAGGTGACTCGTCGCGCTTTACAAATTCTCAGTCTGCGACTCTGgtatgtatgc ... gcttattcagTGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
EST: gi|209720765|gb|BW677555.1|BW677555
EST:     GTCGTGCTTTACAAATTCTCAGTCTGCGACTCTG                         TGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
genomic: GTCGCGCTTTACAAATTCTCAGTCTGCGACTCTGgtatgtatgc ... gcttattcagTGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
EST: gi|298165798|gb|HO008769.1|HO008769
EST:     TCCACTGAGGTGACTCGTCGCGCTTTACAAATTCTCAGTCTGCGACTCTG                         TGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
genomic: TCCACTGAGGTGACTCGTCGCGCTTTACAAATTCTCAGTCTGCGACTCTGgtatgtatgc ... gcttattcagTGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
EST: gi|298182306|gb|HO026481.1|HO026481
EST:     GTCGCGCTTTACAAATTCTCAGTCTGCGACTCTG                         TGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
genomic: GTCGCGCTTTACAAATTCTCAGTCTGCGACTCTGgtatgtatgc ... gcttattcagTGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
EST: gi|298168618|gb|HO009548.1|HO009548
EST:     TCCACTGAGGTGACTCGTCGCGCTTTACAAATTCTCAGTCTGCGACTCTG                         TGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
genomic: TCCACTGAGGTGACTCGTCGCGCTTTACAAATTCTCAGTCTGCGACTCTGgtatgtatgc ... gcttattcagTGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
EST: gi|27423863|gb|CA935383.1|CA935383
EST:     CGCGCTTTACAAATTCTCAGTCTGCGACTCTG                         TGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
genomic: CGCGCTTTACAAATTCTCAGTCTGCGACTCTGgtatgtatgc ... gcttattcagTGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
EST: gi|41145676|gb|CK605887.1|CK605887
EST:     GCGCTTTACAAATTCTCAGTCTGCGACTCTG                         TGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA
genomic: GCGCTTTACAAATTCTCAGTCTGCGACTCTGgtatgtatgc ... gcttattcagTGGGAATCATTAATAAACATGGGAAAAGACTCGAAGCCAAAGGAGTCAGGA