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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTAGGCGCCGATTCTTACGCCGACAAGTTCTTCAACGATCCTTCTCGCTACGgttcgttagggtttcattattatcatttgttaattaaattaattgattgatacttgttgtttgttgattttgctgatttataatgttgttgcatttgatt...

Basic information

species Glycine max
transcript GLYMA04G26840.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G26840.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G61710.3 (Arabidopsis thaliana), 5'ss of exon 1
AATGTTCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTAGGCGCCGATTCTTACGCCGACAAGTTCTTCAACGATCCTTCTCGCTACGgttcgttagggtttcattattatcatttg-ttaattaaattaattgattgatacttgt-tgtttgttgattttgctgatttataatgttgttgcatttgatt-
||| | ||   |||||| ||||| ||||| | | || | ||   |||||| |||| |||||| ||||||| ||||||||||||||||||  |||  | ||||| |       ||| |   | || ||   ||  ||  | |   || ||| || |||  |  ||||| ||  |    |  || | |    |||   |||||| 
AATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACTCCCTTACCATCGTCGGCGTCGATTCCTACGCCGGCAAGTTCTTCAACGATCCCCCTCCGTCCGgttagccccttcttcctccctctcgttcccttttttggaattcatgtttggtaattgcgttcttgttcatcatagatagatagagttcaattg---ttgattt

upper sequence: GLYMA04G26840.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 1
AATGTTCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTAGGCGCCGATTCTTACGCCGACAAGTTCTTCAACGATCCTTCTCGCTACGgttcgttagggtttcattattatcatttgttaattaaattaattgattgatacttgttgtttgttgattttgctgatttataatgttg--ttgcatttgatt----
| | | ||  ||||||| ||||||||||||||| ||   || |||||||| |||| ||| || |||||||||||||||| |  |||  | |||||||  |||    |||||||||||  || | ||| ||       |||  ||  ||  || |||| |||| | | |  ||  || || |  |  ||   ||  | ||| |    
ACTCTGCCGAGATGGGTCTGCCAGAACTGCCGCCACAACCTATGCATCGTCGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTGgt----tagggtttcatcttttttattcgtcttcagtatttttttttttgtatttgtggtttttcgttgctg--gaattgtggttctgaactgagtctgagttact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732633|gb|BM527152.1|BM527152
EST:     AGGCGCCGATTCTTACGCCGACAAGTTCTTCAACGATCCTTCTCGCTACG                         GGATGCAAGGGTCGTCCATTCACGTTGCCAGCAGTGTGCTGAGTACGACTA
genomic: AGGCGCCGATTCTTACGCCGACAAGTTCTTCAACGATCCTTCTCGCTACGgttcgttagg ... atgagtgtagGGATGCAAGGGTCGTCCATTCACGTTGCCAGCAGTGTGCTGAGTACGACTA