1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGCACAAACCCTAATTTGTGCCTCCGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctcacctttcttcttcttcttcttagatgcttcattgcaaaattgtgtatatttctcattctagatcttaattacgctgttacgtttctaagac...
species | Glycine max |
transcript | GLYMA04G14640.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|12774389|gb|BG239316.1|BG239316
genomic: TGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|20814298|gb|BQ298776.1|BQ298776
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: GCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|18734388|gb|BM528153.1|BM528153
genomic: GCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: GCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|6724689|gb|AW309022.1|AW309022
genomic: GCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: TTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|23732733|gb|BU764538.1|BU764538
genomic: TTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: TGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|120533479|gb|EH261612.1|EH261612
genomic: TGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|21678445|gb|BQ630796.1|BQ630796
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|38192415|gb|CF921621.1|CF921621
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: GCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|4293744|gb|AI437949.1|AI437949
genomic: GCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: GCGTGAACAAGCCTCAG CCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAEST: gi|209709536|gb|BW681226.1|BW681226
genomic: GCGTGAACAAGCCTCAGgtagctctca ... gtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTA
EST: CGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|22524921|gb|BU083732.1|BU083732
genomic: CGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: GTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|8670219|gb|BE191326.1|BE191326
genomic: GTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|8827981|gb|BE211711.1|BE211711
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|19268693|gb|BM884949.1|BM884949
genomic: TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|19268958|gb|BM885214.1|BM885214
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: CTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|16995671|gb|BM085043.1|BM085043
genomic: CTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|9901290|gb|BE610258.1|BE610258
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: TGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|11274510|gb|BF324863.1|BF324863
genomic: TGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|14008777|gb|BG725381.1|BG725381
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: CTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|19053098|gb|BM731765.1|BM731765
genomic: CTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: CTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|213592187|gb|DB965978.1|DB965978
genomic: CTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: ACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|120533320|gb|EH261453.1|EH261453
genomic: ACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|4314143|gb|AI461262.1|AI461262
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: CTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|6916448|gb|AW397978.1|AW397978
genomic: CTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|120533365|gb|EH261498.1|EH261498
genomic: TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|5677540|gb|AI938670.1|AI938670
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: GTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|8284791|gb|BE022350.1|BE022350
genomic: GTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: GCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAGEST: gi|17021504|gb|BM092538.1|BM092538
genomic: GCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: TGAACAAGCCTCAG CCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAEST: gi|15661801|gb|BI699172.1|BI699172
genomic: TGAACAAGCCTCAGgtagctctca ... gtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTA
EST: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACAAACCCTAATTTGTGCCTCCGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctcacctttcttcttcttcttcttagatgcttcattgcaaaattgtgtatatttctcattctagatcttaattacgctgttacgtttctaagac
- - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - GCTGTT