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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAACGAGGACGAGTTCCACAAGATCTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCCGACCCCGACAACGATGTCTACGATTTCAGAGAGgtttctaaccctaataataccacgcttcgaatccatgcatacctcttcttttctttgttcaacttttcaccgttgagttttgaatctttgttcgttcgtag

Basic information

species Glycine max
transcript GLYMA04G09200.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09200.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 1
AATCAACGAGGACGAGTTCCACAAGATCTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCCGACCCCGACAACGATGTCTACGATTTCAGAGAGgtttct--aaccctaataataccacgcttcgaatccatgcatacctcttcttttctttgttcaacttttcaccgttgagttttgaatctttgttcgttcgtag
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CGTGGATGAGGACGAGTTTCACAAGATTAGGCTGCTCCACTGCGACTTCCTTATCCGCAAGGTGCCCGACCCCGACGACGACGTCTTCGACTTCAGAGAGgtatatgtagccataagacaaccttctcattagtcagtac-taccgctgagcttcctagtacaatttgtgacaactgcctgcggtatttcaatctcaccaa--

upper sequence: GLYMA04G09200.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 1
AATCAACGAGGACGAGTTCCACAAGATCTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCCGACCCCGACAACGATGTCTACGATTTCAGAGAGgtttctaaccctaataataccacgcttcgaatccatgcatacctcttcttttctttgttcaacttttcaccgttgagttttgaatctttgttcgttcgtag
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GATCAACGAGGACGAGTTTCACAAAATTAGCTTGTTTGATTGCGATTTCTTCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagtttttctgattttctcgtttttttagatgagaattg--tgctattgatgaaagggaatattttggggtttctttgttttttattttttggttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207843277|gb|GD816879.1|GD816879
EST:     TCATTCGCAAGCCCCCCGACCCCGACAACGATGTCTACGATTTCAGAGAG                         ATGTATGTTACTCCTCCGGATACAGATGTTTATTCAATTCCCAAGGTTCTC
genomic: TCATTCGCAAGCCCCCCGACCCCGACAACGATGTCTACGATTTCAGAGAGgtttctaacc ... tcgttcgtagATGTATGTTACTCCTCCGGATACAGATGTTTATTCAATTCCCAAGGTTCTC