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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATCACTTCTTGAAGGCCTCCGAGGGTGCTCAGGAAGTTACCAAGATGCTTGAGGCCACTAGGTTGCATTATCATTCCAATTTCGCGGATAATCGCGgtaggtgtggtttgtttgtttcttttttaatgatttgaagttgaagtttgttgaattgttgagaattgagattgtttgatttcatgtggtggtgatgtggacag

Basic information

species Glycine max
transcript GLYMA04G08400.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08400.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g04200.t01 (Vitis vinifera), 5'ss of exon 1
GATGATCACTTCTTGAAGGCCTCCGAGGGTGCTCAGGAAGTTACCAAGATGCTTGAGGCCACTAGGTTGCATTATCATTCCAATTTCGCGGATAATCGCGgtaggtgtggtttgtttgtttcttttttaatgatt--tgaagttgaagtttgttgaattgt-tgagaattgagattgtttgatttcatgtggtggtgatgtggacag
|| ||||| ||  ||||||| |||||| |||| || || |||||||||||||| ||||| | | || |||||||||| || ||||| || |||||| ||||||  ||   |||| || |   ||  |     |||  |    || |||||  || |    | ||| ||||  ||      ||||| | |    |  |||        
GACGATCATTTTCTGAAGGCGTCCGAGAGTGCCCAAGAGGTTACCAAGATGCTAGAGGCAAATCGGATGCATTATCACTCTAATTTTGCAGATAATGGCGgtaattgct-tttgcttttgctttgctggccaattccttttcttaaagttctttaatgcatctgaaaatttgga------gatttaaggaatcgtagatccatttga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054132|gb|BM732799.1|BM732799
EST:     GCTTGAGGCCACTAGGTTGCATTATCATTCCAATTTCGCGGATAATCGCG                         GGCACATTGATCATTCTGCTAGGGTTATGCGTGTCATAACGTGGAATAGGT
genomic: GCTTGAGGCCACTAGGTTGCATTATCATTCCAATTTCGCGGATAATCGCGgtaggtgtgg ... atgtggacagGGCACATTGATCATTCTGCTAGGGTTATGCGTGTCATAACGTGGAATAGGT