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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaatgtttttgcccggcaaatcttttatcgttttctgtgcaccatttgcttaggcttatagttagctatcagatatatactgtgttgtttgtgaa...

Basic information

species Glycine max
transcript GLYMA04G06960.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06960.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G25320.1 (Arabidopsis thaliana), 5'ss of exon 1
AAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaa-tgt-------------ttttgcccggcaaatcttttatcg----ttttctgtgcaccatt-tgcttaggcttatagttagctatcagat------atatactgtgttgtttgt--gaa----------------------------
|||||| | || ||||||||||| || || ||||| |||||||| || | ||||||||| ||||| || ||||||||||||||||||||||| ||  ||||| || || |||             ||||   ||| | |  |   | |     | | || | ||  ||| || ||   |||    | |||| || |||      || |   ||||||  |||  |||                            
AAGGATCTTCTAAAGAAGAGGAAGATAACAGGTCTTTGCATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaagtgtactagattatctgttttatacggtagacatggaaccaacaatctccttttcaatattctgtttttccttcctatgagctgtctgattgctgcatttgtagtgttgaatgtctgaactgatggtcttactcttaatggcctcag

upper sequence: GLYMA04G06960.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 1
AAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaatgtttttgcccggcaaatcttttatcgttttctgtgc---accatttgcttaggcttatagttagctatcagatatatactgt-gttgtttgtgaa---------------
   ||| | ||  |||||||||| || || ||||| | |||||| || | ||||||||| ||||| || ||||||||||||||||||||||| ||  ||||| || || |||    |     | || | | || |  |  | ||     |  |||  |  ||   | | |    | || | | |||| ||| |||||   | |                
GTTGATCTTCTTGAGAAGAGGAAGATAACCGGTCTTTACATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaa-gttcacact----agatttctcattgcatcttatgttatgctgttttatatggtagagactataatgtcggttttatattgttgttgtaccttactcttgatggtctcag

upper sequence: GLYMA04G06960.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g05690.t01 (Vitis vinifera), 5'ss of exon 1
AAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaatgtttttgcccggcaaa--tcttttatcgtt---ttctgtgcaccatttgcttaggcttatagttagctatcagatatatactgtgttgtttgtgaa
|| ||| | || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||| ||| ||||| |   |   | || |   | | |  ||| || |   |   || ||||    |||   |      |||  |||| ||  || | | | || | || |||     
AAAGATCTTCTAAAGAAGAGGAAGATTACGGGTTTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGTGATTGTCGCCTGATTGTTTATCCTCGAGgtatcgtaaactgttacattgtagacttctcttgtgtctgaattttgtggtttattgattacatactattattagatag-agttgtctgctatcttatttt----

upper sequence: GLYMA04G06960.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S119_72V6.1 (Physcomitrella patens), 5'ss of exon 1
AAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaatgtttttgcccggca----aatcttttatcgttttctgtgcaccatttgcttaggcttatagttagctatcagatatatactgtgttgtttgtgaa
|| ||  | |||||||||||||||||||||||  |||||||||| ||  |||| || ||  | |||||||| |||||||| || || || || ||  |||||  | |  |  ||  |  | |      ||  |  ||||   ||  ||       ||| |  ||  ||  |  |   || | | |  ||   |    | | |  
AAAGACCTTCTGAAGAAGAGGAAAATTACGGGGTTGTGCATCAAAAGTCGGAGATTCCAAGTCGGTAATCGAGATTGTCGGCTCATCGTGTATCCGCGAGgtacggagcgcattctctggtcgctgtgattgtggatcgccgtccttgtgtgcaatgcatgagcgaat--tcggacgtctg-tgtgcacctcgaacatggggt-

upper sequence: GLYMA04G06960.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S86_237V6.1 (Physcomitrella patens), 5'ss of exon 1
AAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaatgtttttgcccggcaaatcttttatcgttttctgtgcaccatttgcttaggcttatagttagc-tatcagatatatactgtgt-tgtttgtgaa---------
|||||  | ||||||||| ||||||| ||||| ||||||||||||||  ||||||||||  | || || ||||| || ||||| || || || ||  |||||        | |||| |||        | |  |  |  |  ||||        || ||    | ||  ||   |   || |   |||    |||  |||           
AAGGAGCTTCTGAAGAAGCGGAAAATCACGGGGCTGTGCATCAAGAGTCGGAGGTTTCAAGTCGGCAACCGGGACTGCCGACTCATCGTGTATCCGCGAGgtacat----tctttggccg-------ctgtggcactcgcaatgcagggccgctttcggacgttggtgtgcactttgaatgtgggctgctcgtgtgggtgggatgggtgag