Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGAATCATGGCAGCTCCAAAGCCAGAGGAGATAAGCCACCCACCAATGGATCAACTTCAAGGCTTAGAGTACTGTATAGACTCAAACCCTTCCTGGGgtatgcccacttcctcaactgcattttcagcttcatgaaaagattgaacttttttgtgtgtatgttgttcacattttggttttaatgagaatgttttgaactgttaacag

Basic information

species Glycine max
transcript GLYMA04G06750.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06750.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G437859_T03 (Zea mays), 5'ss of exon 1
AAAGGAATCATGGCAGCTCCAAAGCCAGAGGAGATAAGCCACCCACCAATGGATCAACTTCAAGGCTTAGAGTACTGTATAGACTCAAACCCTTCCTGGGgtatg--cccacttcctcaactgcattttcagcttcatgaaaagattg-aacttttttgtgtgtatgttgttcacattttggttttaatgagaatgttttgaactgttaacag
    |    ||||| |     ||||| |||||||||||||| || || ||||| || || || || || |||||||| || ||||| |||||| ||||||||  |  ||||       | ||| |    |   ||||        ||| || |   || | || || |  ||    |||| || ||  |     || |||  | | | |    
GGTAGGGAAATGGCGGAGGTGAAGCCGGAGGAGATAAGCCATCCGCCCATGGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtacccaagcttggagctgaaa---cgagttcacatccgcgttggaattcggttctctgaatctgttttgtgttttcgtctttttttt--tgcttttcatt-tcag---

upper sequence: GLYMA04G06750.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G34190.1 (Arabidopsis thaliana), 5'ss of exon 1
AAAGGAATCATGGCAGCTCCAAAGCCAGAGGAGATAAGCCACCCACCAATGGATCAACTTCAAGGCTTAGAGTACTGTATAGACTCAAACCCTTCCTGGGgtatgcccacttcctcaactgcattttcagcttcatgaaaagattgaacttttttgtgtgtatgttgttcacattttggttttaatgagaatgttttgaactgttaacag
    |||||||||    |  |||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| |||||||||||| | |||||||  |  |       |||     | |   ||| ||     | ||||  |||    |   |  |   | |  ||  || | ||| ||                       
TTTAGAATCATGGATCTTGTAAAGCCAGAGGAGATAAGTCACCCACCAATGGATCAGCTTCAGGGTTTAGAGTACTGTATTGACTCAAACCCTCCATGGGgta--cttagccttgaaaccattctctgtactttatt----ggttgacttttcactt---tccggaatcctgatgatgatcttattgcag--------------------

upper sequence: GLYMA04G06750.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 5'ss of exon 1
AAAGGAATCATGGCAGCTCCAAAGCCAGAGGAGATAAGCCACCCACCAATGGATCAACTTCAAGGCTTAGAGTACTGTATAGACTCAAACCCTTCCTGGGgtatgcccacttcctcaactgcattttcagcttcatgaaaagattga-----acttttttgtgtgtatgttgt-tcacattttggttttaatgagaatgttttgaactgttaacag
     |  ||||||||||||||||||||| ||||| ||||| ||||||||||| ||  |||||||||| ||||||||||| |||||||| ||||| ||||||| || |  ||| | | ||    ||  | ||| ||      |||||        |  || | || ||| | | |||| || ||| | |||  | |                    
GTTACAGCCATGGCAGCTCCAAAGCCAGAAGAGATTAGCCATCCACCAATGGACCAGATTCAAGGCTTTGAGTACTGTATCGACTCAAATCCTTCATGGGgtacgctc-tttcttgatcttttcttcaatcttgattctccaattgatgattggctcattttttgaatggtatctcactttctggatgtaaaaacag-------------------