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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGATCTCTCGTAGCGTTCTCTGCGGTTCTTCTGCTTCTCATCCATGGCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAGgtaacccttcaatttgaccctaacccgtcaattggttattttctcgttcctcgatccgtgtttgaatctgaagaagtgagatctgagttggattggatcg...

Basic information

species Glycine max
transcript GLYMA04G06420.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06420.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g06640.t01 (Vitis vinifera), 5'ss of exon 1
TTGGAGATCTCTCGTAGCGTT---CTCTGCGGTTCTTCTGCTTCTCATCCATGGCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAGgtaacccttcaatttgaccctaacccgtcaattggttattttctcgttcctcgatccgtgtttgaatctgaagaagtgagatctgagttggattggatcg-------
   | ||||| ||||     |   | ||||| ||||||| ||||| ||||| | ||| ||||||||||||||||||||||||  ||| ||||| || |||||||| |     |       ||     ||||   |  ||| | |  |  ||  | |||| |||  ||||| | | |           | ||||  || |           
---GCGATCTATCGTCTTCCTTGGCACTGCGATTCTTCTCCTTCTGATCCACGCCTCCCACTGCTTCTACCTCCCCGGCGTCAGTCCTCAGGACTTTCAGAAGgtcagttccctc-----cctctttccgtgtttccgttttgtgttttttgttggatctgtg--tgaattttatgttagatctcgcgggttgcgtttggcttctgagaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712505|gb|BW653688.1|BW653688
EST:     GCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAG                         GGAGATTCATTGCAAGTGAAAGTAAATAAATTAACATCAACGAAGACCCAG
genomic: GCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAGgtaacccttc ... tttgctgcagGGAGATTCATTGCAAGTGAAAGTAAATAAATTAACATCAACGAAGACCCAG
EST: gi|213610853|gb|DB963183.1|DB963183
EST:     GCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAG                         GGAGATTCATTGCAAGTGAAAGTAAATAAATTAACATCAACGAAGACCCAG
genomic: GCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAGgtaacccttc ... tttgctgcagGGAGATTCATTGCAAGTGAAAGTAAATAAATTAACATCAACGAAGACCCAG
EST: gi|213608468|gb|DB972684.1|DB972684
EST:     GCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAG                         GGAGATTCATTGCAAGTGAAAGTAAATAAATTAACATCAACGAAGACCCAG
genomic: GCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAGgtaacccttc ... tttgctgcagGGAGATTCATTGCAAGTGAAAGTAAATAAATTAACATCAACGAAGACCCAG
EST: gi|209727150|gb|BW655215.1|BW655215
EST:     GCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAG                         GGAGATTCATTGCAAGTGAAAGTAAATAAATTAACATCAACGAAGACCCAG
genomic: GCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAGgtaacccttc ... tttgctgcagGGAGATTCATTGCAAGTGAAAGTAAATAAATTAACATCAACGAAGACCCAG