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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACTCCTTCTGGAAGTACTATTCCGGCGCCGAGGTTGCCCCCTACCCCACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagttcacactctaataactgtttccgaggttttaaaatatttaggttttaggatttagggtttacgtctcgtggtttcgtcacgtttattgatattg...

Basic information

species Glycine max
transcript GLYMA04G06310.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06310.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g51540.1 (Oryza sativa), 5'ss of exon 3
TGAACTCCTTCTGGAAGTACTATTCCGGCGCCGAGGTTGCCCCCTACCCCACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagttcacactctaataactgtttccgaggttttaaaatatttaggttttaggatttagggtttacgtctcgtggtttcgtcacgttta-ttgatattg
|||| || || ||||||||||| || ||    |  |||||||| ||||| || |||||||| || || ||||||||||| ||||||||| | |||||||||| |||   |  ||  |||    |    ||  | ||  ||||   |  | |      |    | |   | |    ||| |  || | |  | |||||    
TGAAATCATTTTGGAAGTACTACTCGGGACAAGCTGTTGCCCCATACCCAACAATCTTCATAGGTGGAAACCACGAAGCATCCAATTATTTGTGGGAACTgtgagtcttc-ttcatatatgcttgatggacctcttgcaatacaaaaatgtggtttctctttgctctggccctagggtatattcccatccacttgatgaca

upper sequence: GLYMA04G06310.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G461145_T01 (Zea mays), 5'ss of exon 4
TGAACTCCTTCTGGAAGTACTATTCCGGCGCCGAGGTTGCCCCCTACCCCACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagttcacactctaataactgtttccgaggttttaaaatatttaggtt-ttaggat---ttagggtttacgtctcgtggtttcgtcacgtttattgatattg
||||| | || ||||||||||| || || |  |  ||||| || ||||| |||||||| || || || ||||||||||| ||||||||||| |||||| ||| |||     |  |    |   |||  |   |           ||| || |||  ||    |   ||| | || | ||       | ||    ||   |    
TGAACACATTTTGGAAGTACTACTCAGGAGAAGCAGTTGCTCCGTACCCAACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATTgtgagtgtttgcaatttctataatttgtggtttcccctttcccctagattgttaacatatcctcaagttcatgttt-gtttacaaataactagaatctgtg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590364|gb|DB971526.1|DB971526
EST:     ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACT                         GTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
genomic: ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagttcac ... tttgttgtagGTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
EST: gi|15286129|gb|BI470020.1|BI470020
EST:     ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACT                         GTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
genomic: ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagttcac ... tttgttgtagGTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
EST: gi|18041375|gb|BM309669.1|BM309669
EST:     ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACT                         GTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
genomic: ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagttcac ... tttgttgtagGTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
EST: gi|298175729|gb|HO018326.1|HO018326
EST:     ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACT                         GTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
genomic: ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagttcac ... tttgttgtagGTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
EST: gi|20075977|gb|BQ094760.1|BQ094760
EST:     ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACT                         GTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
genomic: ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagttcac ... tttgttgtagGTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
EST: gi|192305673|gb|FG994355.1|FG994355
EST:     ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACT                         GTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG
genomic: ACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagttcac ... tttgttgtagGTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGG